Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-27 seq300 118 1e-21 seq9 114 2e-20 seq365 107 2e-18 seq570 100 3e-16 >seq2 Length=11923138 Score = 136 bits (150), Expect = 5e-27 Identities = 280/415 (67%), Gaps = 6/415 (1%) Strand=Plus/Plus Query 175235 TTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAG 175294 ||||||| ||||| ||| | || ||||||| || |||||||| |||||| || Sbjct 5955302 TTGTGGAGTTTCTGAAGAAGCCAGAGAGATTCACTGCGGTTGGTGCCAGGATCCCGAAAG 5955361 Query 175295 GCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGG 175354 | | || ||| ||| || ||||| || || ||||| | || |||||| || | Sbjct 5955362 GTGTTCTCCTCATTGGTCCTCCTGGTACCGGGAAAACCCTTTTGGCGAAAGCCATTGCTG 5955421 Query 175355 GTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||||| | ||| || ||| || ||||| | | ||||| ||||||||||| | Sbjct 5955422 GTGAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCG 5955481 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| || || |||||||| || | | ||| ||||| || || | Sbjct 5955482 GTGTTGGTGCCTCCAGAGTCCGCGATCTTTTCAAGAAAGCCAAGGAAAACGCTCCTTGCA 5955541 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 ||||||| | ||||| |||||||| || || | |||| | | | || |||| Sbjct 5955542 TTGTCTTTGTAGATGAAATTGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 5955598 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || | ||||| || || || ||||||||||| || | Sbjct 5955599 GAGGTAATGATGAAAGAGAACAGACTCTCAATCAGCTGCTAACTGAGATGGATGGATTCG 5955658 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | | ||||| ||| | || |||| || || ||| | | || || ||||| Sbjct 5955659 AAGGTAACACTGGTATTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGA 5955713 >seq300 Length=15655920 Score = 118 bits (130), Expect = 1e-21 Identities = 199/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||| ||||| |||||| |||||| ||||| || || ||| ||| Sbjct 13644354 TTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCAAGGGTCCGCGACCTTTTCAAAAAAGCC 13644413 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA---A 175512 |||||| || || ||||| || | ||||| || ||||| || || | ||| | Sbjct 13644414 AAGGAAAATGCTCCTTGCATTGTTTTTGTGGATGAAATAGATGCTGTTGGTAGGCAGACA 13644473 Query 175513 CGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | | || |||| | | |||||||| |||||||| || | ||||| || || Sbjct 13644474 GGAACCGGAATTGGTGGG---GGTAATGACGAAAGAGAACAGACCCTAAATCAGCTCCTG 13644530 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 || ||||||||||| ||||| | | ||||| || | || |||| || || || | Sbjct 13644531 ACTGAGATGGATGGTTTTGAGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGG 13644590 Query 175633 GTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | ||||| ||||| |||| | || | || || |||||||| || Sbjct 13644591 GCAGATATTCTTGACTCCGCCTTGCTGAGACCAGGGCGTTTTGACCG 13644637 >seq9 Length=11574597 Score = 114 bits (126), Expect = 2e-20 Identities = 195/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| ||||| || || || |||| | || || ||| || || |||||| Sbjct 1961997 CCGGGGACGGGGAAGACGCTGCTGGCTAGAGCGGTGGCCGGAGAAGCAGGAGTGCCATTC 1961938 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | || || ||| | || |||||||| ||||| || ||| Sbjct 1961937 TTCTCGTGTGCTGCTTCGGAGTTCGTTGAGCTTTTCGTTGGTGTTGGTGCGTCTAGAGTT 1961878 Query 175435 CGCGATCTCTTTGAAATCGCCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| | || |||||| || |||||||| || || ||||||| Sbjct 1961877 AGGGATTTGTTTGAGAAGGCGAAAGCGAAAGCT--CCTTGTATTGTTTTTATAGATGAGA 1961820 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGT--GGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | |||| | | |||||| || | | | |||||| |||||||| Sbjct 1961819 TTGATGCTGTTGGTAGGCAAAGAGGAGCTGGTATGGGAGGT--GGAAATGATGAGAGAGA 1961762 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 ||| || |||||||| || | || ||||||||||| || Sbjct 1961761 ACAGACGATTAATCAGCTTTTGACGGAGATGGATGGTTT 1961723 >seq365 Length=14695327 Score = 107 bits (118), Expect = 2e-18 Identities = 284/425 (67%), Gaps = 19/425 (4%) Strand=Plus/Plus Query 177549 GAAGCACATTTCAACAAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATT 177607 |||| ||| || | ||||| |||| || | ||||| ||| | || ||||| || || | Sbjct 151848 GAAGGACACCTCCAGAAACT-CCTCGACGGTGTGTGATTCCTCAGTTGCGACCACGTAGT 151906 Query 177608 CATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGAC 177667 |||| | | || || || |||||||||||||| || || || |||||| || | Sbjct 151907 CATCTGGTTTCTCCTGCTGGAGCATGAGCCACATTGCCTCGACGTAGTCCCCAGCGAATC 151966 Query 177668 CCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAA 177727 |||||||||| | || | | ||| || || | || || ||| | || | Sbjct 151967 CCCAGTCTCTCGAGGCCTGTATGTTTCCCAGG---AAGAGCTTGGTCTG--CAATCCGAC 152021 Query 177728 TTTGTT--TGAC----GCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCG 177781 ||| | || | ||| | || |||||| | || || |||| | || || | | Sbjct 152022 CTTGATCCTGCCCAAGGCCCTG-GTTATCTTCCTGGTCACGAAGTTCTCTCCACGGCGAG 152080 Query 177782 GTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAAT 177841 | || ||||||||||||||||| ||| |||||| || | || || | ||| | ||||| Sbjct 152081 GAGACTCGTGGTTGAAGAGGATGCCGTTGCAGGCGTAGAGGCCGTAAGCTTCCCTGTAAT 152140 Query 177842 TTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGG 177901 | | | |||||||||||| |||||||| | | ||| ||||| |||| |||| Sbjct 152141 TGACGGTGTACCAGTGAGCGGCGCATTTGGAGGCAGCGTAGGGAGATCGAGGGTGAAAGG 152200 Query 177902 GTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCT 177960 | || ||||| ||| |||| ||| || | || ||||||||||| | | ||| Sbjct 152201 GCGTGGTCTCAGATTGCGGAG----GAGGAGTTGACCCGAACATCTCCGAGGATCCGGCC 152256 Query 177961 TGGTA 177965 ||||| Sbjct 152257 TGGTA 152261 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||| |||| | || || | | |||||| || | ||||| |||| ||| | ||| Sbjct 6185940 GCAATCGAAACCATCCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGAC 6185999 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | |||| | ||||| ||||| | | || || || || || || ||||||||| Sbjct 6186000 GGA---TCTCAGACTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGTCGAAGGTATCTTC 6186056 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||| | |||| ||| | ||||| || ||||||||||| || || Sbjct 6186057 TTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGATTA 6186116 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 |||||| || || | || || ||||| || || Sbjct 6186117 ACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGG 6186151 >seq570 Length=12873599 Score = 100 bits (110), Expect = 3e-16 Identities = 193/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| ||||| || ||||| ||| | ||| |||| | || || ||| || ||| || || Sbjct 6308861 GCCTGGTACTGGTAAGACACTCTTGGCCAGAGCGGTGGCTGGAGAAGCAGGTGTGCCGTT 6308920 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | | ||| | || | | ||||||||| | ||||| ||||| ||||| || || Sbjct 6308921 CTTTTCCTGCGCGGCTTCGGAGTTTGTGGAGCTTTTTGTGGGTGTTGGTGCGTCTAGAGT 6308980 Query 175434 TCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | | ||| | || || | || | ||| | || || ||||| ||||||||||||| Sbjct 6308981 TAGGGATTTGTTCGAGAAGGCTAAGTCTAAAGCG-CCTTGCATTGTGTTCATTGATGAGA 6309039 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGT--GGTATGCCAGCAAATGACGAGAGAGA 175550 |||| || || || | ||| | | |||||| || | | || |||||| ||||| || Sbjct 6309040 TTGACGCTGTTGGAAGGCAGAGAGGAGCTGGTATGGGAGG--AGGAAATGATGAGAGGGA 6309097 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || ||||| || | | || ||||||||||| ||| Sbjct 6309098 ACAGACGATTAACCAGTTGTTGACTGAGATGGATGGGTTT 6309137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564842357440