Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq25 104 4e-17 seq33 96.9 6e-15 seq72 93.3 8e-14 >seq25 Length=9441222 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | || | |||||| ||| || ||||| | ||| || | | | Sbjct 6394245 CGTAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCAGCTAAAGTCCGACCA 6394186 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || |||||||| |||| ||||| || || || | || |||||||| Sbjct 6394185 TCCTCGAGCTGCTTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATCCCTTCTTTG 6394126 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | ||| ||| || || || |||||||||||| || || Sbjct 6394125 TCTTGAATTTTTGCCTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATG 6394066 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || ||||| ||||| Sbjct 6394065 GTTTTACCGGTAAGAGTCTTGACGAATATCTGCAT 6394031 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || | || |||| || | || | |||||| ||| | || || Sbjct 6394032 ATACCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGACTCTTTTTGGATACTGTAATCA 6393973 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || ||||||||||| | ||| || || |||||| Sbjct 6393972 GCCAGAGTACGGCCATCCTCGAGCTGCTTCCCGGCAAAAATAAGTCTTTGCTGGTCAGGA 6393913 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || |||| || | ||| ||| | || || ||| Sbjct 6393912 GGAATACCTTCTTTATCTTGGATCTTGGCCTTGACATTGTCAATGATGTCTGAGCTTTCA 6393853 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || || || || || |||||||| |||||||| Sbjct 6393852 ACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 6393803 >seq33 Length=9343251 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | ||| ||||| || || || | || | ||| || ||||| Sbjct 3270463 ATTTGCATTCCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTG 3270522 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || | | ||| || | |||||| ||||||||||| | ||| || || Sbjct 3270523 TAATCAGCCAAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGG 3270582 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||||| ||||||||||| || || || || | || | ||| || || | || Sbjct 3270583 TCAGGAGTGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTGTTTGAG 3270642 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || |||||||| || || || || || || |||||||| || ||||| Sbjct 3270643 CTTTCGACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 3270698 >seq72 Length=2765197 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || |||| ||| || || || || |||||||| || ||||| || Sbjct 416064 TGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATC 416123 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| || || || || || || || || || ||||| || || || Sbjct 416124 TTCGCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCC 416183 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| ||||| || ||||| || Sbjct 416184 GTTAGGGTTTTCACAAAGATCTGCATCTT 416212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899647225256160