Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq426 111 2e-19 seq25 100 4e-16 seq154 95.1 2e-14 seq2 91.5 2e-13 >seq426 Length=14042796 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| |||||||||||||| || || || || ||||| ||| Sbjct 4568005 ATGCAGATCTTCGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAGGTCGAGAGTTCG 4567946 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||| || || || || || || || || || || || Sbjct 4567945 GACACTATTGACAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAG 4567886 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||| | |||||| ||||||||||| ||| | || || | ||||| || Sbjct 4567885 CAAAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACACTAGCTGATTACAAC 4567826 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| |||| ||||| || || Sbjct 4567825 ATTCAGAAAGAGTCGACCCTTCACTTGGT 4567797 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || ||||| || || ||| | || || || |||| Sbjct 4568233 ATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACACTCGAGGTGGAGAGTTCT 4568174 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || ||||| || || || || || || || || Sbjct 4568173 GATACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAG 4568114 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||| | |||||| ||||||||||| || |||||| | | || || || Sbjct 4568113 CAAAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTAGAACTCTCGCTGACTACAAC 4568054 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| || ||| |||| |||||| |||| Sbjct 4568053 ATACAGAAGGAGTCGACCCTTCATCTAGT 4568025 >seq25 Length=9441222 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| || || || || | || || ||| || Sbjct 6393803 ATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACCATAACCCTTGAGGTTGAAAGCTCA 6393862 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || |||||||||||||| || ||||| || || Sbjct 6393863 GACATCATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGTATTCCTCCTGACCAG 6393922 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| |||||| ||||||||||| ||| | | ||| | | ||||| | | Sbjct 6393923 CAAAGACTTATTTTTGCCGGGAAGCAGCTCGAGGATGGCCGTACTCTGGCTGATTACAGT 6393982 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || || || || | || |||||||| ||| Sbjct 6393983 ATCCAAAAAGAGTCAACTCTCCACTTGGTTCTCAGGTTAAGAGGTGGT 6394030 >seq154 Length=17905225 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || ||||| || || || || || ||||| |||| Sbjct 1926094 ATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACTTTGGAGGTCGAGAGTTCT 1926035 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| ||| || ||||| || || || || || ||||| || Sbjct 1926034 GACACCATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 1925975 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||||||||||||| | | ||| | | || || || Sbjct 1925974 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTCTTGCGGACTACAAC 1925915 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| |||| |||||| ||||| Sbjct 1925914 ATCCAGAAGGAGTCGACCCTTCATCTAGTG 1925885 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || ||||| || || || || || ||||| |||| Sbjct 1939360 ATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACTTTGGAGGTCGAGAGTTCT 1939301 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| ||| || ||||| || || || || || ||||| || Sbjct 1939300 GACACCATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 1939241 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||||||||||||| | | ||| | | || || || Sbjct 1939240 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTCTTGCGGACTACAAC 1939181 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| |||| |||||| ||||| Sbjct 1939180 ATCCAGAAGGAGTCGACCCTTCATCTAGTG 1939151 >seq2 Length=11923138 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 155912 ACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCT 155971 ||| || |||||||| ||||| || || || ||||| |||| | |||||||||||| || Sbjct 8290336 ACAGGACAAAGAAGGTATACCACCTGATCAGCAAAGGCTGATATTTGCCGGTAAGCAACT 8290395 Query 155972 CGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 |||||| ||||| || | ||||| || || |||||| | || |||||| | || Sbjct 8290396 GGAAGATGGAAGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGT 8290455 Query 156032 GTTAAGATTAAGAGGCGG 156049 |||||| | ||||| || Sbjct 8290456 GTTAAGGCTCAGAGGTGG 8290473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731866163320800