Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq300 114 3e-20 seq25 107 4e-18 seq2 100 6e-16 seq72 96.9 7e-15 seq33 91.5 3e-13 >seq300 Length=15655920 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| ||||| | || || || || | ||| | |||||| ||| || || || | Sbjct 3598626 TACCACCCCTAAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCG 3598567 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 || ||||||| |||| || | |||||| |||||||| || | ||||||||||||||||| Sbjct 3598566 CTAGTGTTCGTCCATCTTCAAGTTGTTTCCCAGCAAATATCAGTCTCTGTTGATCAGGTG 3598507 Query 192428 GTATTCCTTCTTTATCTTGTATT 192450 |||| || ||||| || |||||| Sbjct 3598506 GTATCCCCTCTTTGTCCTGTATT 3598484 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| ||||| | || || || | || | || || ||| || ||||| | Sbjct 7117909 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCC 7117968 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | | || |||||||| || || || ||||| | || ||| ||||| || || Sbjct 7117969 AGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 7118028 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| || || || || || || ||||| || | ||| || ||||| || Sbjct 7118029 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAACC 7118088 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || || |||| ||||| | || ||||||||||| Sbjct 7118089 TCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 7118138 >seq25 Length=9441222 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||||| || | || | ||| | |||||| || || || |||| | Sbjct 6394257 CCACCGCGGAGACGTAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCAGCT 6394198 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| || | || || || |||||||||| ||||| || || ||| | Sbjct 6394197 AAAGTCCGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGG 6394138 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| ||||| || ||||| || | ||||| || ||| Sbjct 6394137 ATCCCTTCTTTGTCTTGAATTTTTGCCTTCACATTGTCAATGGTGTCTGAGCTCTCAACT 6394078 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||||||||| || | || || | ||||||||||| Sbjct 6394077 TCTAGGGTAATGGTTTTACCGGTAAGAGTCTTGACGAATATCTGCAT 6394031 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | || || || | ||| | |||||| |||| | |||||| Sbjct 6394032 ATACCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGACTCTTTTTGGATACTGTAATCA 6393973 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || || || ||||| || | ||| || || ||||| Sbjct 6393972 GCCAGAGTACGGCCATCCTCGAGCTGCTTCCCGGCAAAAATAAGTCTTTGCTGGTCAGGA 6393913 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA-ATCTGACGATTC 192485 || || |||||||||||||| || || || ||||| || | || ||||| ||| Sbjct 6393912 GGAATACCTTCTTTATCTTGGATCTTGGCCTTGACATT-GTCAATGATGTCTGAGCTTTC 6393854 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | ||| || ||||| Sbjct 6393853 AACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 6393803 >seq2 Length=11923138 Score = 100 bits (110), Expect = 6e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | ||| || | ||| | ||||| |||||| ||| || ||||| | | Sbjct 8290473 CCACCTCTGAGCCTTAACACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT 8290414 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||| | |||| |||| ||| ||||| ||||| || | || || |||||||||||| Sbjct 8290413 AGGGTTCTTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTTTGCTGATCAGGTGGT 8290354 Query 192430 ATTCCTTCTTTATCTTGT 192447 || |||||||| || ||| Sbjct 8290353 ATACCTTCTTTGTCCTGT 8290336 >seq72 Length=2765197 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | || | ||| || || || || || | Sbjct 415982 ACCACCACGAAGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGC 416041 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| || | || |||| ||||| || || || || |||| ||| || || ||||| Sbjct 416042 GAGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGG 416101 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || ||||| || || ||| ||||| || | ||||||||||| || Sbjct 416102 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGACGATTCGAC 416161 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || || || |||| ||||| | ||| |||||||| || Sbjct 416162 CTCAAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATCTT 416212 >seq33 Length=9343251 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| || || || |||| || | ||||||||| ||||| || | ||| Sbjct 3270516 GATATTGTAATCAGCCAAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCT 3270575 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || || ||||| | ||||||||||| || || || ||| || ||||| | | Sbjct 3270576 TTGCTGGTCAGGAGTGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGT 3270635 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 | ||| ||| || || ||||| ||||| || ||||| | || || | ||| ||||| Sbjct 3270636 GTTTGAGCTTTCGACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTG 3270695 Query 192534 CAT 192536 ||| Sbjct 3270696 CAT 3270698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984471952491300