Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq25 107 3e-18 seq72 100 5e-16 seq300 93.3 8e-14 seq33 89.7 9e-13 seq2 84.2 4e-11 >seq25 Length=9441222 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | || |||| || | || | ||| | |||||| ||| || || || | | Sbjct 6394257 CCACCGCGGAGACGTAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCAGCT 6394198 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || || | || || || ||||| |||| ||||| ||||| ||| | Sbjct 6394197 AAAGTCCGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGG 6394138 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| ||||| || ||||| || || ||||| || ||| Sbjct 6394137 ATCCCTTCTTTGTCTTGAATTTTTGCCTTCACATTGTCAATGGTGTCTGAGCTCTCAACT 6394078 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||||||||| || | || || | |||||||||||| Sbjct 6394077 TCTAGGGTAATGGTTTTACCGGTAAGAGTCTTGACGAATATCTGCAT 6394031 >seq72 Length=2765197 Score = 100 bits (110), Expect = 5e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| ||||| || || || || |||| ||| ||||| ||||| |||||||| | Sbjct 416053 CGTCTTCCAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCT 416112 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || ||| ||||| || || ||||||||||| || || || || | Sbjct 416113 TGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTA 416172 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || || |||| ||||| | || |||||||| || Sbjct 416173 TTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATCTT 416212 >seq300 Length=15655920 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| ||||||| ||||| | || || || || | ||| | |||||| || || | Sbjct 3598632 TCATGGTACCACCCCTAAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGT 3598573 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 | || | || | |||| | || || | |||||| |||||||| || | ||||||||| | Sbjct 3598572 AGTCCGCTAGTGTTCGTCCATCTTCAAGTTGTTTCCCAGCAAATATCAGTCTCTGTTGAT 3598513 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||||||||| || ||||| || |||||| Sbjct 3598512 CAGGTGGTATCCCCTCTTTGTCCTGTATT 3598484 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||||||| || || || || || | || ||| || || || || |||||||| | Sbjct 7117979 CGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGGATTCCTTCCT 7118038 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || || || ||||| || ||||| || ||||| || ||||| || | Sbjct 7118039 TGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAACCTCTAGTGTTA 7118098 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || || |||| ||||| | ||| ||||||||||| Sbjct 7118099 TCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 7118138 >seq33 Length=9343251 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | |||| || | || || | ||||||||| |||||||| | ||| Sbjct 3270517 ATATTGTAATCAGCCAAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTT 3270576 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || |||||||| | ||||||||||| || || || ||| || ||||| | || Sbjct 3270577 TGCTGGTCAGGAGTGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTG 3270636 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 | ||| ||| || || ||||| ||||| || ||||| | || || | || |||||| Sbjct 3270637 TTTGAGCTTTCGACCTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGC 3270696 Query 172068 AT 172069 || Sbjct 3270697 AT 3270698 >seq2 Length=11923138 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | |||||||| || | ||| || | ||| | ||||| |||||| || || | Sbjct 8290481 TCATGGTTCCACCTCTGAGCCTTAACACCAGATGAAGAGTAGACTCTTTCTGGATGTTGT 8290422 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | || | || | | || |||| ||| ||||| ||||| || | || || || | Sbjct 8290421 AATCCGCTAGGGTTCTTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTTTGCTGAT 8290362 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGT 171980 |||||||||| |||||||| || ||| Sbjct 8290361 CAGGTGGTATACCTTCTTTGTCCTGT 8290336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905128781540400