Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 114 4e-20 seq2 96.9 1e-14 seq570 87.8 5e-12 seq81 84.2 6e-11 >seq9 Length=11574597 Score = 114 bits (126), Expect = 4e-20 Identities = 280/419 (67%), Gaps = 14/419 (3%) Strand=Plus/Plus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || |||| ||||||| || ||||| || ||||||||| |||| Sbjct 1961723 AAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACCT 1961782 Query 289000 CTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | || |||||| ||| |||||||||||||||| || || || |||| Sbjct 1961783 CCCATACCA--------GCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAA 1961834 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | ||| |||| || | |||| | |||| || || || || | || || |||| Sbjct 1961835 CAATACAAGGAGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAA 1961894 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTTGCT 289176 |||||| | | || || || || ||||| | | || ||| ||||| || |||| Sbjct 1961895 CACCAACGAAAAGCTCAACGAACTCCGAAGCAGCACACGAGAA-GAATGGCACTCCTGCT 1961953 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || || || || ||||| || ||||| || || || || || || | || | | Sbjct 1961954 TCTCCGGCCACCGCTCTAGCCAGCAGCGTCTTCCCCGTCCCCGGAGGACCAACCAACA-A 1962012 Query 289237 ACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 || |||||| |||| || || || || | || || || || |||| || || || Sbjct 1962013 ACACCCTTTAGGTATCTTAGCTCCTAAAGCTGTGTACTTGTCTGGATTCTTCAAGAAATC 1962072 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 |||| ||| | | ||| || |||| |||| |||||| || || |||| |||| Sbjct 1962073 AACAACTTCTTGCAACTCAAGCTTAGCCTGATCAGCTCCTGCAACGTCTCCAAATGTAA 1962131 >seq2 Length=11923138 Score = 96.9 bits (106), Expect = 1e-14 Identities = 216/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| || || || ||||| ||||| || | | || | | |||||| || | Sbjct 4560519 ACCAATCGCGTCGATCTCGTCTATGAATATAATGCTTGGTGCAGATTGTCTAGCTTCTTG 4560578 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || | |||||| | || | ||||| ||||||| |||| || | || || ||| | Sbjct 4560579 GAACAAATGTCTTACCCTCGAAGGTCCAACACCAACAAACATCTCCATGAAATCTGAACC 4560638 Query 289149 GGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| | | ||| ||| || ||| || ||| ||||| || | || | ||| |||| Sbjct 4560639 GGAGA-TGGAAAGAAATGGCACACCTGATTCCCCTGCAGTAGCTTTTGCTAAAAGGGTCT 4560697 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-C 289266 | || |||||||| || || |||| || |||| ||||| | || || || || | | Sbjct 4560698 TTCCGGTTCCAGGAGGACCGACTAAAAGTGCTCCTTTTGGGATCTTAGCACC--CAAATC 4560755 Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| || | |||| |||| | || | ||||| ||| | ||| | || ||||| Sbjct 4560756 TTCATACTTTTTAGGGTTCTTGAGGAAATGTACAAACTCCATGATTTCTTGCTTAGCCTC 4560815 Query 289326 ATCACATCCTGCTACATC 289343 ||||||||| || ||||| Sbjct 4560816 ATCACATCCAGCAACATC 4560833 Score = 95.1 bits (104), Expect = 4e-14 Identities = 312/473 (66%), Gaps = 24/473 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTTA-AATCCAT 288946 || || ||||| || ||||| || | ||| | |||| | | ||| ||| ||||||| Sbjct 5955707 ATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGT--GTTACCTTCGAATCCAT 5955650 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| |||| | ||||| || || ||||| ||||||||||| ||||| Sbjct 5955649 CCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATT---ACCTC------ 5955599 Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 || || | || | |||| ||| ||||||||||||||||||| || | || | | Sbjct 5955598 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATG 5955540 Query 289063 CACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || |||| |||| | || ||| ||| | || | || | ||| || |||| || Sbjct 5955539 CAAGGAGCGTTTTCCTTGGCTTTCTTGAAAAGA--TCGCGGACTCTGGAGGCACCAACAC 5955482 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 | ||| |||| || ||||| |||||| | || | | || | ||| | ||| ||||| Sbjct 5955481 CGACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGCACACCAGCTTCA 5955423 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | || |||||| ||| || || || || ||||| || || | ||||| Sbjct 5955422 CCAGCAATGGCTTTCGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATGAGGAGAACA 5955363 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || || || | | || ||| | | | || |||| || |||| | ||| || ||| Sbjct 5955362 CCTTTCGGGATCCTGGCACCAACCGCAGTGAATCTCTCTGGCTTCTTCAGAAACTCCACA 5955303 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | |||| | || | ||||| |||||| ||| || || ||| |||| || Sbjct 5955302 ACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACGTCATCAAACGT 5955250 >seq570 Length=12873599 Score = 87.8 bits (96), Expect = 5e-12 Identities = 356/544 (65%), Gaps = 28/544 (5%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | ||||| ||| || |||||| || |||| | || Sbjct 6309259 CCAGCCACATCAGGCCTATCCACCGTGACCTGCCGATCAAATCTTCCAGGCCTCAACAAC 6309200 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT-AGATTCGGTTTG 288935 || | || | | ||| | ||| || || |||||||| |||||| | | | ||| Sbjct 6309199 GCGGAATCAAGAACATCCGGTCTATTCGTAGCTGCCAA---AACAATCACACCAGAGTTG 6309143 Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | ||| |||||||| || || | || |||| || |||||||| ||||||||| Sbjct 6309142 CCAGAAAACCCATCCATCTCAGTCAACAACTGGTTAATCGTCTGTTCCCTCTCATCATTT 6309083 Query 288994 GAACCTCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCA 289050 |||| | ||| | | |||||| | | | |||||||| ||||| || ||| Sbjct 6309082 ---CCTCCT------CCCATACCAGCTCCTCTCTGCCTTCCAACAGCGTCAATCTCATCA 6309032 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTC-GCAATTGCAAATAATTCTCTTACACGGGA 289109 ||||| | | || || | ||| | || || | | || || || || || | || Sbjct 6309031 ATGAACACAATGCAAGGCGC-TTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGA 6308973 Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTAC 289169 || |||| ||| ||| | | || ||||| || ||||| | || ||| | || Sbjct 6308972 CGCACCAACACCCACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAAAAGAACGGCAC 6308913 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 | |||||| || || || || || |||| ||||||||||| || ||||| ||||| | Sbjct 6308912 ACCTGCTTCTCCAGCCACCGCTCTGGCCAAGAGTGTCTTACCAGTACCAGGCGGTCCAAC 6308853 Query 289230 TAATAGAACTCCCTTT-GGTACTTTTGC-CCCAGCAGACT-TATATTTCTCAGGGCTCTT 289286 || ||| |||||| || | || || |||| | || | || || || || |||| Sbjct 6308852 -AAGCAAACACCCTTTAGGAATCTTAGCACCCA--ATGCTGTGTACTTATCTGGATTCTT 6308796 Query 289287 TAAAAATTCTACAATTTCCT-CAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAG 289345 ||||| || |||| ||| | ||| | || | ||||| | |||| || || ||||| | Sbjct 6308795 CAAAAAGTCCACAACTTCTTGCAACTCCA-ACTTTGCTTGATCAGCACCAGCAACATCTG 6308737 Query 289346 CAAA 289349 | || Sbjct 6308736 CGAA 6308733 >seq81 Length=19988679 Score = 84.2 bits (92), Expect = 6e-11 Identities = 270/412 (66%), Gaps = 18/412 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || || || || | ||| || ||| | Sbjct 5035363 TAAACCCGTCCATTTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCTC 5035422 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| | | | ||||||||||| || || |||||||| | Sbjct 5035423 CTCCTAAA----CCGGTTC-CTC-TCATCCTCCCAACAGCATCGATCTCATCAATGAACA 5035476 Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 | ||| || |||| |||| || |||| || || ||||| || | || || Sbjct 5035477 CTAAACAAGGTGAATTAGCCTTTGCCT---TATTG--AACAAGTCTCTAACCCTAGAAGC 5035531 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||| | |||||| |||| |||| || || || | || | | | || | || Sbjct 5035532 TCCTACACCAACGAACATCTCTATGAACTCCGAGCCCGACAATGAGAAAAACGGAACGCC 5035591 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||| ||| | |||||||| || || || ||||| || ||||| || Sbjct 5035592 GGCTTCTCCGGCTATAGCCTTGGCCAGAAGAGTTTTTCCGGTTCCCGGCGGTCCGGTCAA 5035651 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 | | || ||||| | ||| ||||| || || | |||| || ||| | || || | Sbjct 5035652 CAAGATGCCTTTTGGGATTTTAGCCCC-CAAGGCTGAGAATTTTTCTGGGGTTTTCAAGA 5035710 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | || || || || |||| || | || || || || |||||||||||| Sbjct 5035711 ACTCAACTATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 5035762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471805568811006