Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq365 170 2e-36 >seq365 Length=14695327 Score = 170 bits (188), Expect = 2e-36 Identities = 191/252 (76%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||| ||||| || ||||||||||| ||||| || || | | |||| | |||| Sbjct 6185874 CCGAGTGGATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 6185815 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 |||| || |||||| ||| || || ||||| ||||| ||||| |||||||| Sbjct 6185814 GGACATCGGACATGAATCGGGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGGCGA 6185755 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808 | || || |||||||| ||||| ||||| |||||| ||||| |||| | |||||| Sbjct 6185754 AGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAGTCGC 6185695 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| || | | | | || || || || || || ||||||| ||| ||||||||||| || Sbjct 6185694 GACCGTCT-TGTGAT-AGATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTCTT 6185637 Query 869869 GTACATCTCCCA 869880 |||||||||||| Sbjct 6185636 GTACATCTCCCA 6185625 Score = 113 bits (124), Expect = 6e-19 Identities = 218/319 (68%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||||||||| || || |||| |||||||| Sbjct 6186466 GCCTTTTGGTAATCACCAACTCTCTTCTCGAAAAAGTTTGTTTTACCCTGAAGCGAGATT 6186407 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||||||| ||||| || | | |||| ||| || | || |||| | Sbjct 6186406 AACTCCATCCAATCAAACGGATTAGCCACACCGTAGACCTTACCGTACCCAAGCGCACCC 6186347 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || || ||||||||||| ||||| | ||| | | | |||||| || | Sbjct 6186346 AAAAGCCTATCCGCAACAAACTCGATATACTGACTCATCAAGTCACGGTTCATCCCCACC 6186287 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| || |||| |||| ||||||||| |||||||||||||||| ||| || | Sbjct 6186286 AACGCGCAAGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACG 6186227 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| | || | || || ||| | |||| | | || ||||||| ||||| || Sbjct 6186226 ATC-GACTTCACGCGCTCCTCCGTGAGCTTCGTCCTCAACAGAGTGTAGATGAGGCACGC 6186168 Query 868990 AAAGTCGCAGTGCAACCCT 869008 || |||||||| || ||| Sbjct 6186167 GAAATCGCAGTGTAAGCCT 6186149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107086842732246