Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq154 86.0 5e-12 >seq2 Length=11923138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || ||||| ||||| || || | ||| ||||| || ||||| Sbjct 8290340 GACAAAGAAGGTATACCACCTGATCAGCAAAGGCTGATATTTGCCGGTAAGCAACTGGAA 8290399 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||| | |||||||||||||| || ||||| ||||| | || |||||||| Sbjct 8290400 GATGGAAGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTGTTA 8290459 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 8290460 AGGCTCAGAGGTGGAA 8290475 >seq154 Length=17905225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 |||||||| ||||| || ||| | |||||||| || || ||| | ||| || |||| || Sbjct 1938904 ATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 1938845 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || || ||||| ||||| |||||| | ||| ||| Sbjct 1938844 GAC---ACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGAT 1938788 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || || ||||| ||||||| | ||| |||| |||||| Sbjct 1938787 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCCGATTAC 1938728 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || || || | ||| |||| Sbjct 1938727 AACATTCAGAAGGAGTCGACACTTCACTTGGT 1938696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838389898534