Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq365 178 2e-38 >seq365 Length=14695327 Score = 178 bits (196), Expect = 2e-38 Identities = 237/327 (72%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| ||| |||||| |||||| ||| | || |||||||| || || ||| Sbjct 6186151 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGGCATGAGACCACGTTTC 6186092 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || || | ||||| || || ||||| ||||| || |||||| ||| || Sbjct 6186091 TTAAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 6186032 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||||| ||||| || ||||| | || || || ||||||| ||||||||||| Sbjct 6186031 GCGACGATTCGCTCTGCGAAAGTCTG-AGATCC-----GTCGATCCACGTCATCGCCCAC 6185978 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || || ||| || | || | || ||||| ||||| ||||| ||||| |||| Sbjct 6185977 TGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGGAAGAGATGGTCTCTCTCT 6185918 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| ||| ||||||| |||||| ||| |||| |||||||| || || Sbjct 6185917 TTGTTGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACATCTCCGAGTGGATATTCTCA 6185858 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 6185857 ATCGCGATCTGGAAACCGTAGAAAGCA 6185831 Score = 141 bits (156), Expect = 1e-27 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | |||||||| || |||||| ||| || || ||||| ||||| ||| Sbjct 6185827 GCCTCCGAGACTTGGACATCGGACATGAATCGGGAAGCGAGATTCTCTAGGACGATTCCG 6185768 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||||||||| ||||| ||||| |||||| ||||| |||| Sbjct 6185767 TCTGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGA 6185708 Query 796270 GAGACCCAGT--GGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 |||||| |||||| | | || ||||| || || || ||||| || || | Sbjct 6185707 TTCTCCCAGTCGCGACCGTCTTG--TGATAGATCGACTTCTTCCGCCGTCCAGAACGATG 6185650 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||||| |||||||||||||| ||| || |||| | || || |||| Sbjct 6185649 CCTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGAAACA 6185599 Score = 98.7 bits (108), Expect = 2e-14 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||||||||| || || |||| |||||||| ||||||||||| ||||| || || Sbjct 6186440 CTCGAAAAAGTTTGTTTTACCCTGAAGCGAGATTAACTCCATCCAATCAAACGGATTAGC 6186381 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | |||| ||| || |||| |||| || ||| || | || || || || || | Sbjct 6186380 CACACCGTAGACCTTACCGTACCCAAGCGCACCCAAA-AGCCTATCCGCAACAAACTCGA 6186322 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 | ||||| | ||| | | | |||||| || | | ||| || |||| |||| | Sbjct 6186321 TATACTGACTCATCAAGTCACGGTTCATCCCCACCAACGCGCAAGGAAGCGCGTCGCACA 6186262 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATC 794141 ||||||| |||||||||||||||| ||| || |||| Sbjct 6186261 CAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATC 6186224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916178533030082