Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq426 140 2e-28 seq33 127 2e-24 seq300 120 2e-22 seq154 111 1e-19 seq25 105 5e-18 seq98 98.7 8e-16 seq2 98.7 8e-16 >seq426 Length=14042796 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| ||||| ||||| || ||||| || |||||||| |||||||| Sbjct 4567323 CCACCACGCAGACGCAGAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCCGCC 4567382 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| ||||| || || ||||| | || | | |||||| ||||| || Sbjct 4567383 AAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 4567442 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | || |||||| | || | ||||| || || ||| Sbjct 4567443 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCGACT 4567502 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || ||||| || | ||| || || ||||||||||| Sbjct 4567503 TCAAGAGTAATCGTCTTGCCTGTAAGGGTCTTCACGAATATCTGCAT 4567549 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||| |||||||||||| || || || || ||||| || ||||| || Sbjct 4567551 CCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCC 4567610 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || || || || || || | ||||| || ||||| ||||| || Sbjct 4567611 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 4567670 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || || || ||| || | ||||| | || | |||||||| ||| || Sbjct 4567671 ATGCCTTCCTTATCCTG-AATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCAAC 4567729 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | || || || || |||||||| Sbjct 4567730 CTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || |||||||| || || ||||| ||||| || | ||| || ||| Sbjct 4568250 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCT 4568309 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || || || | || | |||||||||||||| || || ||||| || || Sbjct 4568310 TCCAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGGATTCCCTCCTTATCC 4568369 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| ||| || | || | ||||| || ||| || ||||| || ||||| Sbjct 4568370 TG-AATCTTTGCTTTAACGTTATCGATCGTGTCGGAGCTTTCCACCTCAAGGGTGATAGT 4568428 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || ||||| || |||||||| Sbjct 4568429 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 4568461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGG-ATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAG 29629 |||||| ||||| || | || | || ||| |||| |||| || || || | | ||| Sbjct 791454 ACGCAGTACCAAGTGGATGGTCGCATCCTTGTTGA-TGTTGTAGTCAGCCAATATCCGAC 791396 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || || ||||||||||| || | || || ||||| ||||||||||| ||||||| Sbjct 791395 CATCCTCAAGCTGTTTGCCAGCGTAAAGCAGCCTCTGCTGGTCCGGCGGAATGCCCTCTT 791336 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA-CTTCAAGAGTT 29748 | || || | || || || | || | |||||| | ||| | ||| ||| || Sbjct 791335 TATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCACAGCTTTCCACCTTTAAG-GTG 791277 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || |||||||| |||||||| Sbjct 791276 ATGGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 791239 >seq33 Length=9343251 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | |||||| || || | ||||| || || || ||||| || || ||||| || Sbjct 3270471 TCCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTGTAATCAGC 3270530 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| ||| ||||||||||| || ||| | || | ||||||||| || || | Sbjct 3270531 CAAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGAGT 3270590 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || |||||||| || | || |||||| | || || |||| || ||| || Sbjct 3270591 GATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTGTTTGAGCTTTCGAC 3270650 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| || |||||||| | || || ||||| |||||||| Sbjct 3270651 CTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 3270698 >seq300 Length=15655920 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| || ||||| |||||||| ||||| || || ||||| |||||||| Sbjct 7117908 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGC 7117967 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | ||| || || || | |||| || |||||||||||||| Sbjct 7117968 CAGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGG 7118027 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || || ||| | || | || || || ||| || Sbjct 7118028 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAAC 7118087 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || |||| |||||| || || ||||||||||| Sbjct 7118088 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 7118138 Score = 102 bits (112), Expect = 6e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 29549 TTTATCGTTGT-CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATG 29607 |||||| | || || ||||| | | || ||||| ||||| || || ||||| || ||| Sbjct 3598636 TTTATCATGGTACCACCCCTAAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATG 3598577 Query 29608 TTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGC 29667 || || ||||| | || || ||| || |||||||| |||||| |||||| ||| || Sbjct 3598576 TTGTAGTCCGCTAGTGTTCGTCCATCTTCAAGTTGTTTCCCAGCAAATATCAGTCTCTGT 3598517 Query 29668 TGATCCGGCGGAATACCCTCTTTGTCTTGTA 29698 ||||| || || || ||||||||||| |||| Sbjct 3598516 TGATCAGGTGGTATCCCCTCTTTGTCCTGTA 3598486 >seq154 Length=17905225 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || ||||| |||||||| ||||| |||| |||||| Sbjct 1938461 ACGGAGGACCAAGTGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGCAAGTGTGCGACC 1938520 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| ||||| ||||| | || | | |||||||| || || || || ||||| Sbjct 1938521 ATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCTTT 1938580 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || || | || | ||||| || || || || | ||| || Sbjct 1938581 GTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGAT 1938640 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || || || |||||||| Sbjct 1938641 GGTCTTCCCGGTCAAGGTCTTGACGAAAATCTGCAT 1938676 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| |||||||| || || ||||| ||||| || | || || || Sbjct 1926111 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCT 1926170 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || || || | || | || ||||||||||| ||||| || || || || Sbjct 1926171 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCC 1926230 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||| || | || | |||||||| ||| || || || || ||||| Sbjct 1926231 TGGATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 1926290 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 ||||| || | || |||||||| |||||||| | ||| Sbjct 1926291 TTGCCGGTGAGAGTCTTAACAAAGATCTGCATCTGAAA 1926328 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| |||||||| || || ||||| ||||| || | || || || Sbjct 1939377 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCT 1939436 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || || || | || | || ||||||||||| ||||| || || || || Sbjct 1939437 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCC 1939496 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||| || | || | |||||||| ||| || || || || ||||| Sbjct 1939497 TGGATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 1939556 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 ||||| || | || |||||||| |||||||| | ||| Sbjct 1939557 TTGCCGGTGAGAGTCTTAACAAAGATCTGCATCTGAAA 1939594 >seq25 Length=9441222 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || ||||| |||||||| || || || | || ||| Sbjct 6394246 ACGTAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCAGCTAAAGTCCGACC 6394187 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || || ||| | || | || ||||| ||||| | || || ||||| Sbjct 6394186 ATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATCCCTTCTTT 6394127 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||||| || ||| | || | ||||| || || ||||| || || | Sbjct 6394126 GTCTTG-AATTTTTGCCTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAA 6394068 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | || || || ||||||||||| Sbjct 6394067 TGGTTTTACCGGTAAGAGTCTTGACGAATATCTGCAT 6394031 >seq98 Length=1871237 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||||| ||||| || || ||||| || || || | |||||| Sbjct 1506727 ACGGAGGACGAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCC 1506668 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || || || || | ||||||| ||||| ||||| || || || || || Sbjct 1506667 GTCCTCGAGCTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTT 1506608 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | || || || || || || || || || Sbjct 1506607 GTCCTGGATCTTGGCCTTGACATTGTCGATCGTATCGGAGGACTCGACCTCGAGGGTGAT 1506548 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || |||| |||||| || || ||||||||||| Sbjct 1506547 TGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1506509 >seq2 Length=11923138 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 29548 TTTTATCGTTGT-CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAAT 29606 ||||||| | || || || || | | | ||||| |||||| || || ||||| || || Sbjct 8290486 TTTTATCATGGTTCCACCTCTGAGCCTTAACACCAGATGAAGAGTAGACTCTTTCTGGAT 8290427 Query 29607 GTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTG 29666 ||| |||||||| | ||| | ||| || ||||| || || ||| |||||| ||||| Sbjct 8290426 GTTGTAATCCGCTAGGGTTCTTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTTTG 8290367 Query 29667 CTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||| || || ||||| |||||||| ||| Sbjct 8290366 CTGATCAGGTGGTATACCTTCTTTGTCCTGT 8290336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216204679958