Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq300 159 7e-34 seq426 147 4e-30 seq33 147 4e-30 seq25 147 4e-30 seq154 125 1e-23 seq72 111 3e-19 seq98 100 6e-16 >seq300 Length=15655920 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| ||| ||||| ||||| || || ||||| ||||| || || ||||| | Sbjct 7117909 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCC 7117968 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || |||||||| | ||| ||||| || ||||| |||| || ||||| || || Sbjct 7117969 AGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 7118028 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || ||||| || |||||||| | ||| || Sbjct 7118029 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAACC 7118088 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||||||||||| || || | || || || || ||||||||| || Sbjct 7118089 TCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTTT 7118139 >seq426 Length=14042796 Score = 147 bits (162), Expect = 4e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||||||| ||||| || || ||||| ||||| || || ||||| | Sbjct 4567321 TACCACCACGCAGACGCAGAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCCG 4567380 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||| || || || || |||||||| ||||| || | ||| || || |||| Sbjct 4567381 CCAAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAG 4567440 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || ||||| || || || ||||| || || ||||| ||||| || || || | || Sbjct 4567441 GGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGG-AGCTCTCG 4567499 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | ||| |||||||||||||| | ||||| || ||||||||||| Sbjct 4567500 ACTTCAAGAGTAATCGTCTTGCCTGTAAGGGTCTTCACGAATATCTGCAT 4567549 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || || ||||| ||||| || || ||||| | | | | || ||| Sbjct 4568250 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCT 4568309 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || ||||| || ||||| || ||||| ||||| || || ||||| |||||||| Sbjct 4568310 TCCAGCTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGGATTCCCTCCTTATCC 4568369 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||||||||| || || || ||||| || ||| || || | || || ||| Sbjct 4568370 TGAATCTTTGCTTTAACGTTATCGATCGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTC 4568429 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||||| || || |||||||| Sbjct 4568430 TTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 4568461 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||| || || || || || || || ||||| ||||| ||||| | Sbjct 4567551 CCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCC 4567610 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| || || || || ||||| || ||||| | || || || || ||||| Sbjct 4567611 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 4567670 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| |||||||| || || || || ||||| || ||| ||| || Sbjct 4567671 ATGCCTTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCAACC 4567730 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| || || |||||||| Sbjct 4567731 TCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 >seq33 Length=9343251 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||| || || | ||| ||||| || || || || ||||| ||||||| Sbjct 3270472 CCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTGTAATCAGCC 3270531 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||| ||||| |||||||| || ||||| || |||||||| || || |||| Sbjct 3270532 AAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGAGTG 3270591 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT-CTAC 82762 |||||||| || || || ||||| || || ||||| |||| || | | || || | || Sbjct 3270592 ATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTGTT-TGAGCTTTCGAC 3270650 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| |||||||| || | ||||||||||| |||||||| Sbjct 3270651 CTCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 3270698 >seq25 Length=9441222 Score = 147 bits (162), Expect = 4e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | ||||| ||||| ||||| || ||||| || ||| | ||||||| Sbjct 6394031 TACCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGACTCTTTTTGGATACTGTAATCAG 6393972 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || || || || || || || ||||| || |||||||| || || |||| Sbjct 6393971 CCAGAGTACGGCCATCCTCGAGCTGCTTCCCGGCAAAAATAAGTCTTTGCTGGTCAGGAG 6393912 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT-CT 82760 | || ||||| |||||||| ||||| || || ||||| ||||| | || | || || | Sbjct 6393911 GAATACCTTCTTTATCTTGGATCTTGGCCTTGACATTGTCAATGATGTC-TGAGCTTTCA 6393853 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| |||||||| || | ||||||||||| || ||||| Sbjct 6393852 ACCTCAAGGGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 6393803 Score = 127 bits (140), Expect = 4e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| ||||| || |||||||| || || || |||| || | | | ||| Sbjct 6394246 ACGTAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCAGCTAAAGTCCGACC 6394187 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || ||||||||||| || || || || || | || ||||| || Sbjct 6394186 ATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATCCCTTCTTT 6394127 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 |||||||| ||||| || ||||| ||||| || || | || | || ||||| | || | Sbjct 6394126 GTCTTGAATTTTTGCCTTCACATTGTCAATGGTGTC-TGAGCTCTCAACTTCTAGGGTAA 6394068 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || | ||||| || ||||||||||| Sbjct 6394067 TGGTTTTACCGGTAAGAGTCTTGACGAATATCTGCAT 6394031 >seq154 Length=17905225 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || || ||||| ||||| || || ||||| | | | | | |||||| Sbjct 1926111 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCT 1926170 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | || ||||| || ||||| || || || ||||| ||||| |||||||||||||| Sbjct 1926171 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCC 1926230 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| || || || || || ||| ||| || || | || || ||| Sbjct 1926231 TGGATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 1926290 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | ||||| ||||| |||||||| Sbjct 1926291 TTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 1926322 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || || ||||| ||||| || || ||||| | | | | | |||||| Sbjct 1939377 AGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCT 1939436 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | || ||||| || ||||| || || || ||||| ||||| |||||||||||||| Sbjct 1939437 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCC 1939496 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| || || || || || ||| ||| || || | || || ||| Sbjct 1939497 TGGATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 1939556 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || | ||||| ||||| |||||||| Sbjct 1939557 TTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 1939588 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| ||||| || || ||||| || || ||||| | | | | ||| Sbjct 1925195 ACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACC 1925254 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || |||||||| ||||| || | || ||||||||||| || ||||| || Sbjct 1925255 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGAATCCCTTCTTT 1925314 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| || || || || ||||| || || || | || ||||| | || | Sbjct 1925315 GTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTC-GGAGCTCTCGACTTCAAGGGTGA 1925373 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || |||| ||||| || || |||||||| Sbjct 1925374 TGGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCAT 1925410 >seq72 Length=2765197 Score = 111 bits (122), Expect = 3e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || || || || |||||||| || || || | || | | || Sbjct 415994 ACGGAGCACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCC 416053 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || |||||||| || || || | || || || || || || ||||||||||| Sbjct 416054 GTCTTCCAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTT 416113 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||||| ||||| || || || || | ||| || || | ||||| Sbjct 416114 GTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTAT 416173 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || ||||| |||||||| Sbjct 416174 TGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 416209 >seq98 Length=1871237 Score = 100 bits (110), Expect = 6e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || ||||| ||||| || || || || | || | | || Sbjct 1506727 ACGGAGGACGAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCC 1506668 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| | || || || || ||||| ||||||||||| Sbjct 1506667 GTCCTCGAGCTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTT 1506608 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| || |||||||| | || || || | || || Sbjct 1506607 GTCCTGGATCTTGGCCTTGACATTGTCGATCGTATCGGAGGACTCGACCTCGAGGGTGAT 1506548 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||| || || | || || || || ||||||||| || Sbjct 1506547 TGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 1506508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981819174176282