Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq72 138 7e-28 seq300 111 1e-19 seq154 93.3 3e-14 seq2 93.3 3e-14 seq98 82.4 5e-11 >seq72 Length=2765197 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | ||| || || ||| || ||||||||||| |||| Sbjct 415981 CACCACCACGAAGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGG 416040 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||||||||| |||| |||| ||||||||||| || ||||| |||||||| || | | Sbjct 416041 CGAGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTG 416100 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| |||| |||| ||| | |||||| ||||| Sbjct 416101 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTC-ACATTGTCGATGGTGTCTGACGATTCG 416159 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || || || |||| ||||| |||||||||||||| Sbjct 416160 ACCTCAAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 416209 >seq300 Length=15655920 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | ||||| || || || || || || ||||||||||| | Sbjct 7117909 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCC 7117968 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| |||||||| |||||||| || |||| ||||||||||| |||| Sbjct 7117969 AGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 7118028 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| ||| | || || |||||| || Sbjct 7118029 ATTCCTTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTATCCGATGATTCAAC 7118087 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || ||||| || || |||| ||||| || || |||||||| Sbjct 7118088 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 7118135 >seq154 Length=17905225 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||| |||||| || ||||||||||| | Sbjct 1938449 ACCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGC 1938508 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| || || || || | ||||||||||||| | || Sbjct 1938509 AAGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGGGG 1938568 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || ||| || | ||| | ||||||| || | Sbjct 1938569 GATGCCTTCTTTGTCTTGGATCTTGGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCAA 1938627 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || || || || || ||||||||| Sbjct 1938628 CCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAAATCTGCATA 1938677 >seq2 Length=11923138 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | | |||||||| ||| ||||| |||||| || ||||||||||| | Sbjct 8290473 CCACCTCTGAGCCTTAACACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT 8290414 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || |||| ||| || |||||||| |||| | |||||||| | || Sbjct 8290413 AGGGTTCTTCCATCTTCCAGTTGCTTACCGGCAAATATCAGCCTTTGCTGATCAGGTGGT 8290354 Query 33643 ACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 8290353 ATACCTTCTTTGTC 8290340 >seq98 Length=1871237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||| |||||| |||| || | || || ||||| || Sbjct 1506702 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAG 1506643 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| |||||||| || | || | ||||| ||||| || || || | ||| Sbjct 1506642 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATT 1506584 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | || ||| || || || || | ||||| || || || |||| ||||| || Sbjct 1506583 GTCGATCGTATCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 1506524 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 1506523 GAAGATCTGCAT 1506512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701444120960