Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq25 96.9 3e-15 seq426 87.8 2e-12 seq154 84.2 2e-11 >seq25 Length=9441222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| |||||||||||||| ||| | || || ||| |||||||| || ||| Sbjct 6394226 TTGACTCTTTCTGAATGTTGTAGTCAGCT-AAAGTCCGACCATCCTCGAGCTGCTTCCCG 6394168 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | | ||||||| | ||| || || || | || |||||||| || ||||||| ||| Sbjct 6394167 GCAAAGATTAGCCTCTGCTGGTCCGGTTGGATCCCTTCTTTGTCTTGAATTTTTGCCTTC 6394108 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | || || | ||| ||||| | || | |||||||| || ||||| Sbjct 6394107 ACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATGGTTTTACCGGTAAGAGTC 6394048 Query 132107 TTTATGAAAATCTGCAT 132123 || | ||| |||||||| Sbjct 6394047 TTGACGAATATCTGCAT 6394031 >seq426 Length=14042796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | | || || || ||||||||||| || || ||| Sbjct 4567328 ACGCAGACGCAGAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCCGCCAAGGT 4567387 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| |||||||| || || | |||| ||||| || || || ||||| ||||| Sbjct 4567388 ACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATGCC 4567447 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || || || | | || | || |||| ||| ||||| | Sbjct 4567448 TTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAGCTCTCGACTTCAAG 4567507 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || || || || || | ||| ||||||||| Sbjct 4567508 AGTAATCGTCTTGCCTGTAAGGGTCTTCACGAATATCTGCATG 4567550 >seq154 Length=17905225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||| ||| || ||| || ||| |||||||| || || | Sbjct 1925217 GACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCG 1925276 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||||||||| || |||||||| || || || || | Sbjct 1925277 AAGATGAGACGCTGCTGATCTGGAGGAATCCCTTCTTTGTCCTGGATCTTGGCCTTGACG 1925336 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| ||||| | || | || || || ||||| || || Sbjct 1925337 TTGTCAATGGTGTCGGAGCTCTCGACTTCAAGGGTGATGGTCTTCCCGGTCAGGGTCTTG 1925396 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 1925397 ACGAAAATCTGCAT 1925410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||| || | || || ||| |||||||||||||| | Sbjct 1938483 GACTCTTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCG 1938542 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| |||||||| || ||||||||||| || || || |||| Sbjct 1938543 AAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTCACG 1938602 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| || || | || | || || || |||| || || Sbjct 1938603 TTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTG 1938662 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 1938663 ACGAAAATCTGCAT 1938676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607399025680