Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq426 84.2 2e-11 >seq2 Length=11923138 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||| |||||||| || ||||||||||| || || | | ||| || ||||| ||| Sbjct 8290340 GACAAAGAAGGTATACCACCTGATCAGCAAAGGCTGATATTTGCCGGTAAGCAACTGGAA 8290399 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| |||| | ||| |||||||| || || ||||| || || ||||| | ||||| Sbjct 8290400 GATGGAAGAACCCT-AGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTGTT 8290458 Query 25387 AAGATTGAGAGGAGGAA 25403 ||| | ||||| |||| Sbjct 8290459 AAGGCTCAGAGGTGGAA 8290475 >seq426 Length=14042796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | |||||||| | ||||| | || || ||| | | Sbjct 4568461 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 4568402 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||| ||| ||||| ||||| || || || |||||| Sbjct 4568401 GACACGATCGATAACGTTAAAGCAAAGATTCAGGATAAGGAGGGAATCCCACCGGATCAG 4568342 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | || ||| || || || ||||||| | | | ||||||||| Sbjct 4568341 CAAAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACCTTGGCCGATTACAAC 4568282 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || ||||||||| | || || || Sbjct 4568281 ATCCAGAAGGAATCCACCCTCCACTTGGT 4568253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445090850372160