Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq365 262 6e-64 >seq365 Length=14695327 Score = 262 bits (290), Expect = 6e-64 Identities = 402/563 (71%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || || | |||| | ||| ||||| |||||| || ||||||||||| || || Sbjct 6185599 TGTTTCCGATTCAATACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAGGCATCGTTC 6185657 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870 ||||| || || || ||||| || | | |||||| |||||| | || | || Sbjct 6185658 TGGACGGCGGAAGAAGTCGATCTATCA--CAAGACGGTCGCGACTGGGAGAATCTCAACG 6185715 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| |||||| || |||||||| |||||||||||||| || ||||||| || || ||| Sbjct 6185716 ACGGCGAGCGACACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCAGACGGAATC 6185774 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||||| || || ||| || ||| || |||||| | | ||||| ||| Sbjct 6185775 GTCCTAGAGAATCTCGCTTCCCGATTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGCT 6185834 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| ||||||||||| || || || |||||||| || | ||| ||||| || Sbjct 6185835 TTCTACGGTTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGTCTCCTCCTC 6185894 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 ||||| ||| |||||||| |||| ||||| ||||| ||||| ||||| || | Sbjct 6185895 GACACGTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCAATCGAAACCATC 6185954 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || ||| || || | |||||||||| ||||||| || || ||| | Sbjct 6185955 CCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGACGTGGATCGAC-----GGATCTC-AG 6186008 Query 1456171 ACTTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||||| || ||||| |||||| || ||| ||||||| || ||||| ||||| || || Sbjct 6186009 ACTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGC 6186068 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAA 1456288 |||||| | || || ||||| ||||| || || |||||||| || || ||| ||| Sbjct 6186069 TTCTGCTCGATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGG-ATTAACCTTCTCCAA 6186127 Query 1456289 CGAATTTATCAGTCGCGACGAAG 1456311 ||| || ||| ||| ||||||| Sbjct 6186128 CGAGTTGATCTCTCGAGACGAAG 6186150 Score = 87.8 bits (96), Expect = 3e-11 Identities = 155/221 (70%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 1456522 GATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGC 1456581 |||| || ||| |||||||||||||||| |||||||| |||| |||| || || Sbjct 6186224 GATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTGCGC 6186283 Query 1456582 GCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | | | || |||||| | || | ||| | ||||| || || ||| || || || | Sbjct 6186284 GTTGGTGGGGATGAACCGTGACT--TGATGAGTCAGTATATCGAGTTT-GTTGCGGATAG 6186340 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 || | | ||||| || | ||| ||| |||| | ||| || ||||| |||| Sbjct 6186341 GCTTTTGGGTGCGCTTGGGTACGGT-AAGGTCTACGGTGTGGCTAATCCGTTTGATTGGA 6186399 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||||| |||||||| |||| || || |||||||||||| Sbjct 6186400 TGGAGTTAATCTCGCTTCAGGGTAAAACAAACTTTTTCGAG 6186440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177749663727356