Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq33 116 5e-21 >seq1 Length=21755756 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | || || | ||| | || | ||||| |||| |||||| Sbjct 437884 TCCTCCTTGATCGACATAGCGAGCGGTATCATTGAATACACGTAGCATTGGAACAATACC 437825 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| || || || || || Sbjct 437824 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 437765 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| ||| | |||||| ||||||||| |||||||| Sbjct 437764 AACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATAT 437705 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 437704 TCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 437662 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||||| ||| || | ||||||||||| |||||||||||| | ||| | | || Sbjct 437552 AGTTCCCGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 437493 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || || ||||| ||||| || ||||| || | | || | ||||| Sbjct 437492 GTAAGTTTGTATTGCGGATTCAATATCTTCCTTGTGAATGCCAACAGAAACCCTCATCAG 437433 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| |||||||| | || || ||| | | ||| || ||||||||| | || || Sbjct 437432 CATGTGCTGAGGCCTCTCAACTACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAG 437373 Query 70170 AGTTTTAAACCCAAAATAGT 70189 |||||| || ||||| |||| Sbjct 437372 AGTTTTGAATCCAAAGTAGT 437353 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68737 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATT 68796 ||||||||| | || || || |||||| ||||| | | |||||||||| || ||||| Sbjct 439712 ACTCTACGACTATAGATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCAAGAATC 439653 Query 68797 TGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTT 68856 || ||||| ||||||||||| |||||||| | | | |||||| | |||| || Sbjct 439652 TGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCATTCTTT 439593 Query 68857 ATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGA 68916 || |||| | ||| ||||||||| | || || || | |||||||| | | Sbjct 439592 GAAATCATATCCCTGAGAGCAGCCCAATCCCAGCGGTCCGAAGGAATTACATTCCACATA 439533 Query 68917 TCGTATTGTAGAATTCC 68933 || ||| |||||||| Sbjct 439532 TCAGGTTGAAGAATTCC 439516 >seq33 Length=9343251 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | ||||| |||| |||||| Sbjct 5836447 TCCTCCTTGATCGACATAGCGAGCAGTATCATTGAATACACGTAGCATTGGAACAATACC 5836506 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| | || || || || || || Sbjct 5836507 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTGGCACGGATGTTGTGAACTGA 5836566 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| ||| | |||||| ||||||||| |||||||| Sbjct 5836567 AACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATAT 5836626 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || ||||||||||| ||||| | ||||| ||||| Sbjct 5836627 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5836668 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||||| || || | ||||||||||| |||||||||||| | ||| | | || Sbjct 5836781 AGTTCCCGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 5836840 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || || || || ||||| || ||||| || | | || | ||||| Sbjct 5836841 GTAAGTTTGTATTGCGGAGTCAATATCTTCCTTGTGAATGCCAACAGAAACCCTCATCAG 5836900 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| |||||||| | ||| ||| ||| | | ||| || ||||||||| | || || Sbjct 5836901 CATGTGCTGAGGCCTTTCAACCACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCAAG 5836960 Query 70170 AGTTTTAAACCCAAAATAGT 70189 |||||| || ||||| |||| Sbjct 5836961 AGTTTTGAATCCAAAGTAGT 5836980 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||||||| | || || || |||||| ||||| | | |||||||||| || ||| Sbjct 5834648 AAGACTCTACGACTATAGATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCAAGA 5834707 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 || || ||||| ||||||||||| |||||||| | | | |||||| | |||| Sbjct 5834708 ATCTGGCTTGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCATTC 5834767 Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913 || || |||| | ||| ||| ||||| | || || || | |||||||| Sbjct 5834768 TTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCCGAAGGAATTACATTCCAC 5834827 Query 68914 AGATCGTATTGTAGAATTCC 68933 | ||| ||| |||||||| Sbjct 5834828 ATATCAGGTTGAAGAATTCC 5834847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903321902320