Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq365 100 2e-16 >seq365 Length=14695327 Score = 100 bits (110), Expect = 2e-16 Identities = 233/345 (68%), Gaps = 10/345 (3%) Strand=Plus/Plus Query 43942 tttttATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||| || || || || || || || || ||||| || ||||| ||||||||||| || | Sbjct 6185834 TTTCTACGGTTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGTCTCCTCCT 6185893 Query 44002 AGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAATGCGATAGAAAC 44058 || ||||||||||| || | |||| | |||| | || || || ||||| Sbjct 6185894 CGACACGTACATCAAGGACAACAAAGAGAGAGACCATC---TCTTCCGCGCAATCGAAAC 6185950 Query 44059 AGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 | ||| ||| | | ||||| | ||||| | | ||||| | | | | Sbjct 6185951 CATCCCTTGCGTCGCGA-AGAAAGCTCAGTGGGCGATGACGTGGATCGACGGATCTCAGA 6186009 Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCG 44176 |||| | ||| ||| | ||||| || || || ||||| || ||||| || || | | Sbjct 6186010 CTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGCT 6186069 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 | ||| | || || ||| | |||||||| ||| | |||||||| || || || || || Sbjct 6186070 TCTGCT-CGATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGATTAACCTTCTCCAAC 6186128 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||||| || ||| || ||||||||||| |||||||| || ||| Sbjct 6186129 GAGTTGATCTCTCGAGACGAAGGCTTACACTGCGATTTCGCGTGC 6186173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452909531190