Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq154 109 5e-19 seq72 107 2e-18 seq426 100 2e-16 seq25 95.1 1e-14 seq33 87.8 2e-12 seq300 86.0 5e-12 >seq154 Length=17905225 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| ||||| ||| || |||| | || || Sbjct 1938696 ACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGACCATCCTCA 1938755 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| ||||| || || | || || || || | Sbjct 1938756 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGG 1938815 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | |||||| | | || ||||| || || || | ||| Sbjct 1938816 ATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTCTTG 1938875 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| |||||||||||||||||| Sbjct 1938876 CCGGTGAGAGTCTTCACAAAGATTTGCATA 1938905 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| ||||| ||| || | |||| | || || Sbjct 1925430 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGACCATCCTCA 1925489 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | ||| || || || | Sbjct 1925490 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 1925549 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | || || | | ||||| || || || || | ||| Sbjct 1925550 ATCTTGGCCTTCACGTTGTCGATGGTATCGGAGCTCTCAACCTCCAGTGTGATTGTCTTG 1925609 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| ||||||||||| |||||| Sbjct 1925610 CCGGTAAGAGTCTTCACAAAGATCTGCATA 1925639 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || || || |||||||| ||| || | |||| | Sbjct 1925652 CGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACCA 1925711 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || |||||| | || | | ||| || ||||| || | ||| || || Sbjct 1925712 TCCTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTTG 1925771 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| ||||| | | || | ||||| | | ||||| || | ||| || Sbjct 1925772 TCTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCAACCTCCAAAGTAATG 1925831 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || |||| ||||||||| |||||||||||| Sbjct 1925832 GTCTTTCCGGTCAAAGTTTTCACGAAGATTTGCATA 1925867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | || || ||||| ||||| ||||| || || || |||| | || || Sbjct 1938468 ACCAAGTGAAGAGTCGACTCTTTCTGAATGTTGTAATCAG-CAAGTGTGCGACCATCCTC 1938526 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||| ||| | ||||||||||| ||||| || || | || ||||| || Sbjct 1938527 GAGCTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCTTTGTCTTG 1938586 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| |||| | | || | ||||| | | ||||| || | ||| || | || Sbjct 1938587 GATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTT 1938646 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || || || || |||||| Sbjct 1938647 CCCGGTCAAGGTCTTGACGAAAATCTGCATA 1938677 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || || || |||||||| ||| || | |||| | Sbjct 1938918 CGCAAAACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCA 1938977 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || |||||| | || | | || || ||||| || | ||| || || Sbjct 1938978 TCCTCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATACCTTCCTTG 1939037 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| ||||| | | || | ||||| | | || || || | ||| || Sbjct 1939038 TCTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAAGTGATG 1939097 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || |||| ||||||||| |||||||||||| Sbjct 1939098 GTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCATA 1939133 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||| ||| || | |||| | || ||| Sbjct 1925202 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCG 1925261 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| ||||| || || | || ||||| || | Sbjct 1925262 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGAATCCCTTCTTTGTCCTGG 1925321 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | || ||||| || || || | || Sbjct 1925322 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACTTCAAGGGTGATGGTCTTC 1925381 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || || || || || |||||| Sbjct 1925382 CCGGTCAGGGTCTTGACGAAAATCTGCATA 1925411 >seq72 Length=2765197 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || || || || ||||||||| | ||||| ||||||| ||||| Sbjct 416006 ATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTCCAGCTG 416065 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||| |||||| | || | ||||| || ||||| || | || || || || |||||| Sbjct 416066 TTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 416125 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 ||||| | || | ||||||| | ||| || || || ||||| | || ||||| Sbjct 416126 CGCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCTTCCCCGT 416185 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||||||||| ||||| Sbjct 416186 TAGGGTTTTCACAAAGATCTGCAT 416209 >seq426 Length=14042796 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| ||||| |||||||| | || || || || ||||||||||| || Sbjct 4567549 TGCCACCACGCAGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTG 4567608 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || | || || ||||| || |||||| | || | | ||| || ||||| | Sbjct 4567609 CCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAG 4567668 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| |||||| || | | | || | ||||| | | ||||| Sbjct 4567669 GGATGCCTTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCAA 4567728 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || | ||||| || ||||| ||||| ||||| |||||| Sbjct 4567729 CCTCGAGGGTAATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCATA 4567778 >seq25 Length=9441222 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| ||| |||| || || | || | || ||| Sbjct 6394011 ACCAAGTGGAGAGTTGACTCTTTTTGGATACTGTAATCAGCCAGAGTACGGCCATCCTCG 6393952 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| |||| || | || || || || || | ||| |||||||| | Sbjct 6393951 AGCTGCTTCCCGGCAAAAATAAGTCTTTGCTGGTCAGGAGGAATACCTTCTTTATCTTGG 6393892 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | |||||| | |||||| || || ||||| | ||| Sbjct 6393891 ATCTTGGCCTTGACATTGTCAATGATGTCTGAGCTTTCAACCTCAAGGGTTATGGTCTTG 6393832 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| || ||||||||||||||| Sbjct 6393831 CCAGTAAGAGTCTTTACAAAGATTTGCATA 6393802 >seq33 Length=9343251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || |||||||| || | || | || | || || || ||||| |||||||| || | Sbjct 3270472 CCACCGCGCAAACGAAGGACAAGGTGAAGAGTTGACTCCTTTTGGATATTGTAATCAGCC 3270531 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | |||||||| ||||||||||| |||| || | || || || || | Sbjct 3270532 AAAGTACGACCATCTTCGAGTTGTTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGAGTG 3270591 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| || | | || || |||| || | ||| || Sbjct 3270592 ATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAACTGTGTTTGAGCTTTCGACC 3270651 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| | ||||| || ||||| || |||||||| |||||| Sbjct 3270652 TCAAGAGTTATGGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCATA 3270699 >seq300 Length=15655920 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | ||||| || | ||| || || || || || ||||| || | Sbjct 7117909 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCC 7117968 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||||| | || || |||||| | || || ||||| ||||||||||| Sbjct 7117969 AGTGTCCTCCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 7118028 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| |||| | || | || || | | |||||| Sbjct 7118029 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGATGATTCAACC 7118088 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | || ||||| || |||||||| || || ||||| Sbjct 7118089 TCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 7118135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931095869456