Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-27 seq9 114 2e-20 seq570 109 7e-19 seq300 107 2e-18 seq365 84.2 3e-11 >seq2 Length=11923138 Score = 136 bits (150), Expect = 5e-27 Identities = 280/415 (67%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| || | ||| ||||| | | || || Sbjct 5955713 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGTGTTACCTTCGAAT 5955654 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | || |||||||| |||||||| || | Sbjct 5955653 CCATCCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 5955597 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||| ||||| | |||||||| || Sbjct 5955596 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 5955537 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||||| ||| | | || |||||||| || || |||||| ||||| ||| Sbjct 5955536 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTGGAGGCACCAACACCGACA 5955477 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | ||||| || ||| || ||| | |||||| || Sbjct 5955476 AACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCA 5955417 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 |||||| || | ||||| || || ||||| || ||| ||| || | ||| Sbjct 5955416 ATGGCTTTCGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATGAGGAGAACACCTTTC 5955357 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 |||||| |||||||| || ||||||| || | ||| ||||| ||||||| Sbjct 5955356 GGGATCCTGGCACCAACCGCAGTGAATCTCTCTGGCTTCTTCAGAAACTCCACAA 5955302 >seq9 Length=11574597 Score = 114 bits (126), Expect = 2e-20 Identities = 195/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | |||||||| || |||||||||||||||||| | | Sbjct 1961723 AAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--AC 1961780 Query 11600 ATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | || |||||| | | |||| | || || |||||||||||||| || || ||||||| Sbjct 1961781 CTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATAC 1961840 Query 11658 ATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 | || |||||| || | ||||| | ||| | ||| || ||||| ||||| Sbjct 1961841 AAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACC 1961898 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||| || | ||| || || | | |||| ||| || |||||| || || ||| || Sbjct 1961899 AACGAAAAGCTCAACGAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTCC 1961958 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || || || ||||| ||||| || || Sbjct 1961959 GGCCACCGCTCTAGCCAGCAGCGTCTTCCCCGTCCCCGG 1961997 >seq570 Length=12873599 Score = 109 bits (120), Expect = 7e-19 Identities = 195/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || || ||||| || ||||| |||||||||||| || Sbjct 6309137 AAACCCATCCATCTCAGTCAACAACTGGTTAATCGTCTGTTCCCTCTCATCATTTCCT-- 6309080 Query 11599 CATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | || |||||| | | ||| | || || || ||||||||||||||||| ||||| Sbjct 6309079 CCTCCCATACCAGCTCCTCTCTGCCTTCCAACAGCGTCAATCTCATCAATGAACACAATG 6309020 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | || | || || | ||| | ||| || ||||| ||||| Sbjct 6309019 CAAGG-CGCTTTAGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGACGCACCAACACC 6308961 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||| | ||||||||| | | || | ||| | ||| || ||| || ||| || Sbjct 6308960 CACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAAAAGAACGGCACACCTGCTTCTCC 6308901 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 || | |||| ||| | ||| ||||| || ||||| ||| Sbjct 6308900 AGCCACCGCTCTGGCCAAGAGTGTCTTACCAGTACCAGGC 6308861 >seq300 Length=15655920 Score = 107 bits (118), Expect = 2e-18 Identities = 200/293 (68%), Gaps = 18/293 (6%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | |||| ||||| ||||| | | || || || Sbjct 13644637 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCCCTGTTGGTTGCA 13644578 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | ||||| Sbjct 13644577 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTT 13644518 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGC--GTTGCT---TGC 11624 | || |||||||| || ||||| ||| ||| || | | ||| || ||| Sbjct 13644517 AGGGTCTGTTCTCTTTCGTCATT---------ACCCCCACCAATTCCGGTTCCTGTCTGC 13644467 Query 11625 CCACC----GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 | ||| ||||| || ||||| | || ||||| || || |||||| ||| || Sbjct 13644466 CTACCAACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTT 13644407 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 | || || ||||| |||||| |||||| ||||| ||||||||||| ||||| Sbjct 13644406 TTGAAAAGGTCGCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAA 13644354 >seq365 Length=14695327 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | || || |||||| || || ||||||||||| || ||| Sbjct 6186151 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGGCATGAGACCACGTTTC 6186092 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| |||| | |||||| ||||||||||||||||| || || || || || Sbjct 6186091 TTAAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 6186032 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | || || ||||| | |||| | | || | ||| |||| ||||| | Sbjct 6186031 GCGACGATTCGCTCTGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATCGCCCACTGA 6185975 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || |||||| | | || || | |||| ||| || Sbjct 6185974 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGC 6185940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026991444800