Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq365 102 1e-16 seq9 87.8 2e-12 seq52 84.2 3e-11 >seq365 Length=14695327 Score = 102 bits (112), Expect = 1e-16 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || |||||| | || ||||||||||| || ||| Sbjct 6186151 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGGCATGAGACCACGTTTC 6186092 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||||||||||| || || || ||||||||||| || || || || ||||| Sbjct 6186091 TTAAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 6186032 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || ||||| || || | | || | || | |||| ||||||||||||| Sbjct 6186031 GCGACGATTCGCTCTGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATCGCCCACTGA 6185975 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 || || ||| ||| || |||| ||| | ||| || Sbjct 6185974 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGC 6185940 >seq9 Length=11574597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || ||||||||||| ||||| || ||||| || || ||||| | |||||||| || | Sbjct 1961723 AAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCA--C 1961780 Query 14213 ATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | || ||| || | | |||| |||| || || ||||| ||||| || ||||| |||| Sbjct 1961781 CTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATAC 1961840 Query 14271 ATGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 | || |||| | | || ||||| | ||| | ||||| ||||| ||||| Sbjct 1961841 AAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACC 1961898 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 || || | ||| || || | | || | ||| || ||| || || | ||| || Sbjct 1961899 AACGAAAAGCTCAACGAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTCC 1961958 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||| || || || |||||||||||||| || Sbjct 1961959 GGCCACCGCTCTAGCCAGCAGCGTCTTCCCCGTCCCCGG 1961997 >seq52 Length=6559834 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||||||||||||| |||| ||||| || || || || || || |||||||||||||| Sbjct 2047517 GAATTACCGAGAAGCCTACGGTCTGTTCGCATGTAACGGAATCCTGTTCAACCACGAGTC 2047576 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 12022 || || ||||| | |||||||||| | ||||||||| Sbjct 2047577 GCCGCGACGTGGAGAGAATTTCGTGACGAGGAAGATCAC 2047615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430267979280