Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq365 122 1e-22 seq2 120 4e-22 seq570 104 3e-17 seq9 89.7 6e-13 >seq365 Length=14695327 Score = 122 bits (134), Expect = 1e-22 Identities = 140/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 |||||||| | ||||| |||| |||| | || | || | | || || |||||| Sbjct 6185967 AAGAAAGCTCAGTGGGCGATGACGTGGATCGACGGA---TCTCAGACTTTCGCAGAGCGA 6186023 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || |||| || || || || || |||||||||||||| ||| ||||||| | |||| Sbjct 6186024 ATCGTCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTC 6186083 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||| || ||||||||||| || | ||||||||||||| | |||||||| Sbjct 6186084 TGGCTTAAGAAACGTGGTCTCATGCCTGGATTAACCTTCTCCAACGAGTTGATCTCTCGA 6186143 Query 94930 GACGAGGG 94937 ||||| || Sbjct 6186144 GACGAAGG 6186151 >seq2 Length=11923138 Score = 120 bits (132), Expect = 4e-22 Identities = 283/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| || || || | || | |||||| || | | || || Sbjct 5955713 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGTGTTACCTTCGAAT 5955654 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || || || | ||| ||||| | ||||||||| || | Sbjct 5955653 CCATCCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCT---CCA 5955597 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || |||||||| ||||| | ||||| ||||| Sbjct 5955596 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 5955537 Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||||| || ||| ||| ||||| || || | ||| || ||||| || Sbjct 5955536 GGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTGGAGGCACCAACACCGAC 5955478 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || ||| || ||| || |||||| | Sbjct 5955477 AAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAG 5955419 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||||||| || | ||| || || || ||||| || ||| |||||| ||||| Sbjct 5955418 CAATGGCTTTCGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATGAGGAGAACACCTT 5955359 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 || ||| |||| ||| || | ||||||| || | ||| ||||| ||||||| || Sbjct 5955358 TCGGGATCCTGGCACCAACCGCAGTGAATCTCTCTGGCTTCTTCAGAAACTCCACAACTT 5955299 Query 9972 C 9972 | Sbjct 5955298 C 5955298 >seq570 Length=12873599 Score = 104 bits (114), Expect = 3e-17 Identities = 258/382 (68%), Gaps = 11/382 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | |||||||| || ||||||| |||||||| || Sbjct 6309137 AAACCCATCCATCTCAGTCAACAACTGGTTAATCGTCTGTTCCCTCTCATCATTTCCT-- 6309080 Query 9673 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | || |||||| | | ||| |||| || || ||||||||||||||||| || ||| Sbjct 6309079 CCTCCCATACCAGCTCCTCTCTGCCTTCCAACAGCGTCAATCTCATCAATGAACACAATG 6309020 Query 9731 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 || || | ||| | ||| || || | ||||| || || || | || || ||| Sbjct 6309019 CAAGG-CGCTTTAGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGACGCACCAACA 6308963 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || ||||| | ||||||||| | | || | || | ||| || ||| | ||| Sbjct 6308962 CCCACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAAAAGAACGGCACACCTGCTTCT 6308903 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || || | |||| ||| | || |||||||| ||||| ||| || | || | Sbjct 6308902 CCAGCCACCGCTCTGGCCAAGAGTGTCTTACCAGTACCAGGCGGTCCAACAAGCAAACAC 6308843 Query 9908 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 9967 ||| |||||||| || || | | ||| | || || | ||| | ||| |||||| Sbjct 6308842 CCTTTAGGAATCTTAGCACCCAATGCTGTGTACTTATCTGGATTCTTCAAAAAGTCCACA 6308783 Query 9968 ATTTCTTCCAA-TTCATCTTTG 9988 | ||||| ||| | || ||||| Sbjct 6308782 ACTTCTTGCAACTCCAACTTTG 6308761 >seq9 Length=11574597 Score = 89.7 bits (98), Expect = 6e-13 Identities = 193/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 |||||||||||||| |||||||| || ||||| || ||||| | |||||||| | | Sbjct 1961723 AAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--AC 1961780 Query 9674 ATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | || |||||| | | |||| | || || |||||||||||||| || || || || | Sbjct 1961781 CTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATAC 1961840 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 | || |||||| || || ||||| | ||||| || || || | || || ||| Sbjct 1961841 AAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCAACA 1961896 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 ||||| || | ||| || || | | || | ||| || ||| || || | ||| Sbjct 1961897 CCAACGAAAAGCTCAACGAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCT 1961956 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || | |||| || || || ||||| ||||| || || Sbjct 1961957 CCGGCCACCGCTCTAGCCAGCAGCGTCTTCCCCGTCCCCGG 1961997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256148495120