Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq365 125 8e-24 >seq365 Length=14695327 Score = 125 bits (138), Expect = 8e-24 Identities = 314/465 (68%), Gaps = 18/465 (4%) Strand=Plus/Plus Query 59658 GATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTC 59717 || ||||| || ||||| ||| ||||| || |||||||| ||||| ||||||||| Sbjct 6185697 GACTGGGAGAATCTCAACGACGGCGAGCGACACTTCATCAAACACGTCCTCGCCTTCTTC 6185756 Query 59718 GCGGCGAGTGATGGAATTGTGATGGAAAATATAGA--CATGAA-CTTTTCCAAGGATGTC 59774 || || || ||||| || | || ||| | | | || | | ||| |||||| Sbjct 6185757 GCCGCCTCAGACGGAATCGTCCTAGAGAATCTCGCTTCCCGATTCATGTCC---GATGTC 6185813 Query 59775 CAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTC 59833 || | | ||||| || | ||||||| | ||| ||| | ||| ||||||||| Sbjct 6185814 CAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCG-ATTGAGAATATCCACTC 6185872 Query 59834 CGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCT 59893 |||| |||| ||| | |||| | || ||||||| |||||| | ||| Sbjct 6185873 GGAGATGTACAGTCTCCTCCTCGACACGTACATCAAGGACAACAAAGAGAGAGACCATCT 6185932 Query 59894 GTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 ||||| || || || || |||| || || | ||||| | ||||| ||| || Sbjct 6185933 CTTCCGCGCAATCGAAACCATCCCTTGC-GTCGCGAAGAAAGCTCAGTGGGCGATGACGT 6185991 Query 59953 GGATGAGTCCTGGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 |||| | | ||| | ||| || ||| | || || | ||||| || ||||| ||| Sbjct 6185992 GGATC-GAC--GGATC-TCAGACTTTCGCAGAGCGAATCGTCGCTTTCGCCTGCGTCGAA 6186047 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 || ||||||||||| || ||||| | ||||||||||| || || ||||| |||||| Sbjct 6186048 GGTATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTTAAGAAACGTGGTCTCATG 6186107 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 || || | | |||||||||||| |||| || || ||||| ||| Sbjct 6186108 CCTGGATTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGGC 6186152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520425514720