Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq72 129 4e-25 seq154 111 1e-19 seq426 109 3e-19 seq25 91.5 9e-14 seq300 89.7 3e-13 >seq72 Length=2765197 Score = 129 bits (142), Expect = 4e-25 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | ||| || || |||||| || ||||| || || | Sbjct 415983 CCACCACGAAGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCG 416042 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| ||||||| || ||||| ||||| ||||| || ||||| |||||||| || Sbjct 416043 AGTGTGCGCCCGTCTTCCAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGG 416102 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCA 34657 | ||| ||||||||| |||||| | ||| || | || |||||| || | || | Sbjct 416103 ATTCCTTCCTTGTCTTGGATCTTC-GCTTTCACATTGTCGATGGTGTCTGACGAT-TCGA 416160 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | |||||| || || || |||| ||||||||||| |||||||| || Sbjct 416161 CCTCAAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATCTT 416212 >seq154 Length=17905225 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| ||| || |||||||| ||||| | | Sbjct 1938450 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGCA 1938509 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || || |||||||| || || || | |||||| || || || || Sbjct 1938510 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGGGGG 1938569 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||||| | || ||| | ||| ||||| |||||| || Sbjct 1938570 ATGCCTTCTTTGTCTTGGATCTTG-GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAAC 1938628 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| || || || || ||||||||||| Sbjct 1938629 CTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAAATCTGCAT 1938676 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||| | ||| || || |||||| || ||||| || || | ||| || || | ||||| Sbjct 1925885 CACTAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCATCTTC 1925944 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || ||||| || || || | ||| ||||| || || | ||||||||||||| Sbjct 1925945 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1926004 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | || ||| | || ||||| ||||| || |||| || ||||| | Sbjct 1926005 GATC-TTAGCCTTCACGTTGTCGATGGTGTCAGAACTCTCGACCTCCAAAGTGATCGTCT 1926063 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || |||| ||||| || || |||||||| Sbjct 1926064 TTCCCGTTAGGGTTTTGACGAAGATCTGCAT 1926094 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||| | ||| || || |||||| || ||||| || || | ||| || || | ||||| Sbjct 1939151 CACTAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCATCTTC 1939210 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || ||||| || || || | ||| ||||| || || | ||||||||||||| Sbjct 1939211 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1939270 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | || ||| | || ||||| ||||| || |||| || ||||| | Sbjct 1939271 GATC-TTAGCCTTCACGTTGTCGATGGTGTCAGAACTCTCGACCTCCAAAGTGATCGTCT 1939329 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || |||| ||||| || || |||||||| Sbjct 1939330 TTCCCGTTAGGGTTTTGACGAAGATCTGCAT 1939360 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| |||||| || ||||| ||||| | Sbjct 1925184 CCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCC 1925243 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || || || || || || | |||||| || || || || Sbjct 1925244 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGAGGA 1925303 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| |||||| | || ||| | ||| ||||| |||||| || Sbjct 1925304 ATCCCTTCTTTGTCCTGGATCTTG-GCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGAC 1925362 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || || ||||| | || || || ||||||||||| Sbjct 1925363 TTCAAGGGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCAT 1925410 >seq426 Length=14042796 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || ||| || |||||||| ||||| | ||||| || Sbjct 4567788 AGACGAAGAACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCTAGTGTACGA 4567847 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || || | || |||||||| || | ||||||| Sbjct 4567848 CCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCC 4567907 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | |||||| | ||| ||||| ||||| || |||| || Sbjct 4567908 TTGTCCTGGATC-TTAGCCTTAACGTTGTCAATAGTGTCCGAACTCTCGACCTCCAAAGT 4567966 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| || || |||||||| Sbjct 4567967 GATGGTTTTTCCAGTCAAAGTTTTAACGAAGATCTGCAT 4568005 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||||||||| || || |||||| ||||| || ||||||| | || || Sbjct 4567560 AGACGCAACACCAAATGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCCAAGGTACGA 4567619 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || || | ||| |||||||| || | || ||| Sbjct 4567620 CCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCC 4567679 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | || ||| | ||| ||||| ||| || || || | ||| Sbjct 4567680 TTATC-CTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCAACCTCGAGGGT 4567738 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || ||||| || |||||||| Sbjct 4567739 AATTGTCTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 4567777 >seq25 Length=9441222 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| ||| || |||||||| || || | | || || | || || || || Sbjct 6394233 TGAAGAGTTGACTCTTTCTGAATGTTGTAGTCAGCTAAAGTCCGACCATCCTCGAGCTGC 6394174 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| |||| | ||| |||||||| | | || || |||||| ||| ||| Sbjct 6394173 TTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATCCCTTCTTTGTCT-TGAATTTT 6394115 Query 34624 TGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || || | ||| |||||| |||||| ||||| | ||| || ||||||||||| Sbjct 6394114 TGCCTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATGGTTTTACCGGT 6394055 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||||||| Sbjct 6394054 AAGAGTCTTGACGAATATCTGCAT 6394031 >seq300 Length=15655920 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| | ||| ||||| || ||||| ||| || || ||||| || || | Sbjct 3598624 CCACCCCTAAGCCTCAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCT 3598565 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 |||||||| | |||||||||||||| || |||||||| | | |||||| || || || Sbjct 3598564 AGTGTTCGTCCATCTTCAAGTTGTTTCCCAGCAAATATCAGTCTCTGTTGATCAGGTGGT 3598505 Query 34600 ACTCCCTCCTTGTC 34613 | ||||| ||||| Sbjct 3598504 ATCCCCTCTTTGTC 3598491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727152780654