Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 >seq1 Length=21755756 Score = 93.3 bits (102), Expect = 4e-14 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || ||| | || || ||| || |||||| | | || ||| ||| | ||| Sbjct 2317055 GCTGATTATACCGGGCAAGGATTTGATCAGCTGTTGGATGTAATCAACAAGATCAAGAAC 2317114 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || |||||||| || |||| | |||| || ||||| || ||||| |||||| Sbjct 2317115 AATCCTGATGATCGACGGATTATAATGTCAGCTTGGAATCCTCCAGATCTTAAGCTGATG 2317174 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 || || || || ||||||| | ||| ||||||||||| || ||||| || || || || Sbjct 2317175 GCACTTCCTCCATGCCACATGTT-TGCACAATTCTACGTTGCAAATGGAGAACTTTCATG 2317233 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 || | ||||| || || | |||||||| | || || || || |||||||| || Sbjct 2317234 TCAAATGTATCAGCGCTCAGCCGACATGGGTCTTGGTGTACCATTTAACATTGCCTCATA 2317293 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGT 34728 | | || || || | ||| ||||||| || Sbjct 2317294 CTCCCTTCTTACATGCATCCTCGCTCACGT 2317323 Score = 93.3 bits (102), Expect = 4e-14 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||||| ||| | || || || | ||| |||||||| || || || || | Sbjct 2317323 ACGTGAGCGAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAATGGTACACCAAGA 2317264 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 |||||||| | || || ||||| | || || || || || ||||| || ||||||||| Sbjct 2317263 CCCATGTCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACGTAGAAT 2317204 Query 6737 TG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| | ||||||| || || || |||||||| ||||| || ||||| || Sbjct 2317203 TGTGCA-AACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCTGGAGGATTCCAAGC 2317145 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 |||| | |||| || |||||||| || ||| | ||| ||| || | | ||| Sbjct 2317144 TGACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTGATTACATCCAACAG 2317085 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||| || ||| || || | ||| || || Sbjct 2317084 CTGATCAAATCCTTGCCCGGTATAATCAGC 2317055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258825107360