Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05]
638 sequences; 243,110,105 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq9 96.9 3e-15
>seq9
Length=11574597
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548
|| ||||||||||||||||| ||| || || |||||||| ||| | || ||||
Sbjct 3600007 TACACATGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGA 3599948
Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608
|| | |||| | || | | | |||| || | ||||| || ||||| || ||||||
Sbjct 3599947 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATG 3599888
Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664
|| || || | ||| |||| ||| || |||||||| || | ||| ||||| |||||
Sbjct 3599887 TCCGCAGAACGCTGATACATTTGACATGAGAGCTCTCCTTCTGCCACATAGAACTG 3599832
Score = 89.7 bits (98), Expect = 4e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 118493 CATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAA 118552
|||||| |||||||| ||| || || |||||||| ||| | || |||||| |
Sbjct 3606708 CATGAGTGTCCCCAATAACATGGATAAAATCACCAGGAACAAGATCGCACACGTGAGCGA 3606649
Query 118553 TCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTG 118612
|||| | || | | | |||| || | ||||| || ||||| || ||||||||||
Sbjct 3606648 GCATGAAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATGTCTG 3606589
Query 118613 CTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664
| || | ||| |||| ||| || |||||||| || | ||| ||||| |||||
Sbjct 3606588 CAGAACGCTGATACATTTGACATGAGAGCTCTCCTTCTGCCACATAGAACTG 3606537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414473577183832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |