Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 3e-15 >seq9 Length=11574597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || ||||||||||||||||| ||| || || |||||||| ||| | || |||| Sbjct 3600007 TACACATGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGA 3599948 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 || | |||| | || | | | |||| || | ||||| || ||||| || |||||| Sbjct 3599947 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATG 3599888 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || || || | ||| |||| ||| || |||||||| || | ||| ||||| ||||| Sbjct 3599887 TCCGCAGAACGCTGATACATTTGACATGAGAGCTCTCCTTCTGCCACATAGAACTG 3599832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 118493 CATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAA 118552 |||||| |||||||| ||| || || |||||||| ||| | || |||||| | Sbjct 3606708 CATGAGTGTCCCCAATAACATGGATAAAATCACCAGGAACAAGATCGCACACGTGAGCGA 3606649 Query 118553 TCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTG 118612 |||| | || | | | |||| || | ||||| || ||||| || |||||||||| Sbjct 3606648 GCATGAAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATGTCTG 3606589 Query 118613 CTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 | || | ||| |||| ||| || |||||||| || | ||| ||||| ||||| Sbjct 3606588 CAGAACGCTGATACATTTGACATGAGAGCTCTCCTTCTGCCACATAGAACTG 3606537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414473577183832