Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq154 109 4e-19 seq426 87.8 1e-12 seq33 84.2 2e-11 seq25 84.2 2e-11 >seq154 Length=17905225 Score = 109 bits (120), Expect = 4e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||||||| | || || ||| || || | || ||||| ||| | Sbjct 1939132 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAGGTCGAGAGCTCT 1939073 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| ||||| ||||| |||||| | || ||| | Sbjct 1939072 GACACCATCGACAAC--GTGAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCGGACC 1939015 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || || ||||| || || | || || | ||||| |||| ||||||||| Sbjct 1939014 AGCAAAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCTTGGCCGATTACA 1938955 Query 27968 ACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || ||| | ||||| || |||||||||||| | ||||| || Sbjct 1938954 ATATCCAGAAGGAGTCAACACTT--CACTTGGTTTTGCGTCTTCGTGGTGG 1938906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || || || || ||||| || || |||| ||||| ||| || Sbjct 1925410 ATGCAGATTTTCGTCAAGACCCTGACCGGGAAGACCATCACCCTTGAAGTCGAGAGCTCC 1925351 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||||||||| |||| || | Sbjct 1925350 GACACCATTGACAAC--GTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCTCCAGATC 1925293 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || ||||| || | || || | |||| |||| ||||||||| Sbjct 1925292 AGCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACA 1925233 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 1925232 ACATCCAGAAGGAGTCGACTCTTCACTTGGTCCTCCGTCTTCGTGGTGG 1925184 >seq426 Length=14042796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || ||||| || || ||||| |||| ||||| ||| || Sbjct 4567549 ATGCAGATATTCGTGAAGACCCTTACAGGCAAGACGATTACTCTTGAAGTCGAGAGCTCC 4567490 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||||||||| | || ||| | Sbjct 4567489 GACACCATTGACAAT--GTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCGGACC 4567432 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || || || ||||| || | || || | || | |||| | ||||||| Sbjct 4567431 AGCAACGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGTACCTTGGCGGATTACA 4567372 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || || | || |||||| ||||| ||||||| || Sbjct 4567371 ACATTCAGAAGGAATCGACCCTTCACTTGGTTCTGCGTCTGCGTGGTGG 4567323 >seq33 Length=9343251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||||||||| || || || |||| ||||||||| | Sbjct 3270698 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGACCATAACTCTTGAGGTCGAAAGCTCA 3270639 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || ||||| ||||| || || ||||||||||| | | || | Sbjct 3270638 AACACAGTTGACAAT--GTCAAGGCTAAGATCCAGGACAAAGAAGGAATCACTCCTGACC 3270581 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | ||||||||||| |||||| | || || | || | ||| | ||||||| Sbjct 3270580 AGCAAAGACTTATTTTTGCCGGTAAACAACTCGAAGATGGTCGTACTTTGGCTGATTACA 3270521 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||| ||| ||| | || | || | |||||||| || || Sbjct 3270520 ATATCCAAAAGGAGTCAACTCTTCACCTTGTCCTTCGTTTGCGCGGTGG 3270472 >seq25 Length=9441222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||||||||||| || || || |||| || |||||| | Sbjct 6393803 ATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACCATAACCCTTGAGGTTGAAAGCTCA 6393862 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || || ||||||||| |||| || | Sbjct 6393863 GACATCATTGACAAT--GTCAAGGCCAAGATCCAAGATAAAGAAGGTATTCCTCCTGACC 6393920 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | ||||||||||| || || | || || | || | || | ||||||| Sbjct 6393921 AGCAAAGACTTATTTTTGCCGGGAAGCAGCTCGAGGATGGCCGTACTCTGGCTGATTACA 6393980 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||||||| ||| | || |||||| Sbjct 6393981 GTATCCAAAAAGAGTCAACTCTCCACTTGGTT 6394012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859632947426