Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq72 93.3 4e-14 >seq72 Length=2765197 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| ||||| ||| || ||||| || || ||||| ||||| || |||| || Sbjct 416000 CACGAGATGAAGCGTCGACTCCTTCTGTATGTTGTAGTCGGCGAGTGTGCGCCCGTCTTC 416059 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 |||||||| || || ||||| | |||||||||| ||||||| | | || ||||| Sbjct 416060 CAGCTGTTTTCCGGCGAATATCAATCGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTT 416118 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| ||| | | | | || || ||| || || || | || || | | Sbjct 416119 GGATCTTCGCTTTCACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTTATTGTCT 416178 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | ||||| || ||||| |||||||| ||||||||| || Sbjct 416179 TCCCCGTTAGGGTTTTCACAAAGATCTGCATCTTTGCG 416216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542260014494