Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq300 114 9e-21 seq72 113 3e-20 seq25 107 1e-18 seq154 104 2e-17 seq98 104 2e-17 seq2 100 2e-16 seq426 93.3 3e-14 >seq300 Length=15655920 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || ||||| || || || ||||| || Sbjct 7118138 AAAATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAATCA 7118079 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | || || ||||| ||||| | ||||| || Sbjct 7118078 TCGGATACGATCGACAATGTGAAGGC-GAAGATCCAGGACAAGGAAGGAATCCCGCCGGA 7118020 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| | || || ||||| || ||| ||||||||| | || | | ||||| Sbjct 7118019 TCAGCAGCGACTGATCTTCGCCGGAAAGCAATTGGAAGACGGGAGGACACTGGCGGATTA 7117960 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| || || || || || | || || ||| | | || |||||||| Sbjct 7117959 CAACATCCAGAAGGAATCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGA 7117908 >seq72 Length=2765197 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || |||||||| ||||| || || || || || || || || || Sbjct 416212 AAGATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACAATAACCCTTGAGGTCGAATCG 416153 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | ||||| ||||| | || || || Sbjct 416152 TCAGACACCATCGACAATGTGAAAGCGAAGA-TCCAAGACAAGGAAGGAATCCCACCGGA 416094 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || ||||| ||||| ||||| |||||||||| ||||| | | ||| || Sbjct 416093 CCAGCAGCGATTGATATTCGCCGGAAAACAGCTGGAAGACGGGCGCACACTCGCCGACTA 416034 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||||||||| || ||||| || Sbjct 416033 CAACATACAGAAGGAGTCGAC 416013 >seq25 Length=9441222 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || ||||| || || || |||||||| | | Sbjct 6394031 ATGCAGATATTCGTCAAGACTCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 6394090 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||||| || ||||||||||| | | || || || Sbjct 6394091 GACACCATTGACAATGTGAAGGCAAAAA-TTCAAGACAAAGAAGGGATCCAACCGGACCA 6394149 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||| |||||||| || || || || || | || ||||||| || ||||| Sbjct 6394150 GCAGAGGCTAATCTTTGCCGGGAAGCAGCTCGAGGATGGTCGGACTTTAGCTGACTACAA 6394209 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 6394210 CATTCAGAAAGAGTCAAC 6394227 >seq154 Length=17905225 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| || ||||| || | | Sbjct 1925410 ATGCAGATTTTCGTCAAGACCCTGACCGGGAAGACCATCACCCTTGAAGTCGAGAGCTCC 1925351 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||||||||| | || |||||||| Sbjct 1925350 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCTCCAGATCAG 1925291 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | ||||| || | |||||||||| Sbjct 1925290 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAC 1925231 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1925230 ATCCAGAAGGAGTCGAC 1925214 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || ||||| ||||| || || | | Sbjct 1926322 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 1926263 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | |||| | || || ||||| | || || ||||| Sbjct 1926262 GACACCATCGATAACGTTAAAGCCAAAA-TCCAGGATAAGGAAGGAATTCCTCCGGATCA 1926204 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || ||||||||| || ||||| | ||||||||| Sbjct 1926203 GCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGGACTTTGGCCGATTACAA 1926144 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 1926143 CATCCAGAAGGAATCCAC 1926126 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || |||||| | || ||||| | | Sbjct 1938676 ATGCAGATTTTCGTCAAGACCTTGACCGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 1938617 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||||||||| | || |||||||| Sbjct 1938616 GACACCATTGACAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 1938557 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || ||||| || || || | ||||| | | ||||||||| Sbjct 1938556 CAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTGCTGATTACAAC 1938497 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 1938496 ATTCAGAAAGAGTCGAC 1938480 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || ||||| ||||| || || | | Sbjct 1939588 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCT 1939529 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | |||| | || || ||||| | || || ||||| Sbjct 1939528 GACACCATCGATAACGTTAAAGCCAAAA-TCCAGGATAAGGAAGGAATTCCTCCGGATCA 1939470 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || ||||||||| || ||||| | ||||||||| Sbjct 1939469 GCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGGACTTTGGCCGATTACAA 1939410 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 1939409 CATCCAGAAGGAATCCAC 1939392 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| || || || ||||| || ||||| || | | Sbjct 1938904 ATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 1938845 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||| ||||| | || |||||||| Sbjct 1938844 GACACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 1938785 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | ||||| || | |||||||||| Sbjct 1938784 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCCGATTACAAC 1938725 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| ||| | || || || Sbjct 1938724 ATTCAGAAGGAGTCGACACTTCACTTGGT 1938696 >seq98 Length=1871237 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || || ||||| ||||| || || ||| Sbjct 1506509 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCC 1506568 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | || || ||||| ||||| | || || || Sbjct 1506569 TCCGATACGATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGAATCCCTCCGGA 1506627 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || || |||| |||||| | | ||| || Sbjct 1506628 CCAGCAGCGATTGATCTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTA 1506687 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 1506688 CAACATCCAGAAGGAATCGAC 1506708 >seq2 Length=11923138 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| |||| || ||||| || | | ||||||||||| || ||||||||| Sbjct 8290340 GACAAAGAAGGTATACCACCTGATCAGCAAAGGCTGATATTTGCCGGTAAGCAACTGGAA 8290399 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | | || ||| ||||||||||| || |||||||| || | ||| | || ||| Sbjct 8290400 GATGGAAGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTGTTA 8290459 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||| ||| Sbjct 8290460 AGGCTCAGAGGTGGA 8290474 >seq426 Length=14042796 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || ||||| ||||| || ||||| || || || || | | Sbjct 4568461 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 4568402 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| |||| | || || || || || | || || ||||| Sbjct 4568401 GACACGATCGATAACGTTAAAGCAAAGA-TTCAGGATAAGGAGGGAATCCCACCGGATCA 4568343 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || || ||||| || || |||||||| | || || || | ||||||||| Sbjct 4568342 GCAAAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACCTTGGCCGATTACAA 4568283 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 4568282 CATCCAGAAGGAATCCAC 4568265 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| | || |||||||| |||||| | || || || || Sbjct 4568005 ATGCAGATCTTCGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAGGTCGAGAGTTCG 4567946 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| || |||| | || || ||||| || || | || || || || Sbjct 4567945 GACACTATTGACAACGTTAAGGC-TAAGATCCAGGACAAGGAGGGAATCCCACCGGACCA 4567887 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || |||||||| || || || || || | || || ||| |||||||| Sbjct 4567886 GCAAAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACACTAGCTGATTACAA 4567827 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || |||||||| || | || || ||| Sbjct 4567826 CATTCAGAAAGAGTCGACCCTTCACTTGGTT 4567796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006971764104