Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 113 6e-20 seq33 96.9 5e-15 >seq1 Length=21755756 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||||| | ||| | || | | |||||||| |||||| Sbjct 437883 CCTCCTTGATCGACATAGCGAGCGGTATCATTGAATACACGTAGCATTGGAACAATACCA 437824 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| |||| || || || || || Sbjct 437823 TTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGAA 437764 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || || | ||| || |||||||||||| || || Sbjct 437763 ACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATATT 437704 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || || |||||| ||||| | ||||| |||||| Sbjct 437703 CCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 437662 Score = 86.0 bits (94), Expect = 9e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| | ||| || | || ||||||||||| || |||||| | ||| | || || Sbjct 437552 AGTTCCCGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 437493 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| || || ||||| || || | ||| ||||| || || | || | ||||| Sbjct 437492 GTAAGTTTGTATTGCGGATTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 437434 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| |||||||| || ||||| || | | ||| || | ||||||| | || | Sbjct 437433 GCATGTGCTGAGGCCTCTCAACTACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAA 437374 Query 78577 AAGTTTTAAAACCAAAATAGT 78597 |||||| || ||||| |||| Sbjct 437373 GAGTTTTGAATCCAAAGTAGT 437353 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||||||||| | || || || |||||| ||||| | | ||||||| || || | ||| Sbjct 439712 ACTCTACGACTATAGATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCAAGAATC 439653 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || || |||||||||||||| |||||||| | | | |||||||| |||| || Sbjct 439652 TGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCATTCTTT 439593 Query 77265 CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGA 77324 || |||| | ||| ||||||||| | || ||||| | |||| ||| | | Sbjct 439592 GAAATCATATCCCTGAGAGCAGCCCAATCCCAGCGGTCCGAAGGAATTACATTCCACATA 439533 Query 77325 TCGTATTGTAGAATTCC 77341 || ||| |||||||| Sbjct 439532 TCAGGTTGAAGAATTCC 439516 >seq33 Length=9343251 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | ||| | || | | |||||||| |||||| Sbjct 5836448 CCTCCTTGATCGACATAGCGAGCAGTATCATTGAATACACGTAGCATTGGAACAATACCA 5836507 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| | || || || || || || Sbjct 5836508 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTGGCACGGATGTTGTGAACTGAA 5836567 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || || | ||| || |||||||||||| || || Sbjct 5836568 ACACCAATACCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAATGTATCATATATT 5836627 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || |||||| ||||| | ||||| ||||| Sbjct 5836628 CCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5836668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||||||| | || || || |||||| ||||| | | ||||||| || || | Sbjct 5834647 CAAGACTCTACGACTATAGATGTTTGAGGTATACGGTTCAAAACATTCATTATTCCCAAG 5834706 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| || || |||||||||||||| |||||||| | | | |||||||| |||| Sbjct 5834707 AATCTGGCTTGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCATT 5834766 Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320 || || |||| | ||| ||| ||||| | || ||||| | |||| ||| Sbjct 5834767 CTTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCCGAAGGAATTACATTCCA 5834826 Query 77321 AAGATCGTATTGTAGAATTCCGTTACTAGCATA 77353 | ||| ||| |||||||| | || || ||| Sbjct 5834827 CATATCAGGTTGAAGAATTCCCTAACCAGAATA 5834859 Score = 86.0 bits (94), Expect = 9e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| | || || | || ||||||||||| || |||||| | ||| | || || Sbjct 5836781 AGTTCCCGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 5836840 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| || || || || || || | ||| ||||| || || | || | ||||| Sbjct 5836841 GTAAGTTTGTATTGCGGAGTCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATCA 5836899 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| |||||||| ||||||||| || | | ||| || | ||||||| | || | Sbjct 5836900 GCATGTGCTGAGGCCTTTCAACCACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCAA 5836959 Query 78577 AAGTTTTAAAACCAAAATAGT 78597 |||||| || ||||| |||| Sbjct 5836960 GAGTTTTGAATCCAAAGTAGT 5836980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663260016320