Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_031274.1 Length=50509 Score E Sequences producing significant alignments: (Bits) Value seq88 113 1e-20 >seq88 Length=8365 Score = 113 bits (124), Expect = 1e-20 Identities = 276/416 (66%), Gaps = 2/416 (0%) Strand=Plus/Minus Query 12052 CGCTGGTAGGGTTTGGTATGCTGGTTTCTCTGGCCAGATTATTGATGGTGATGATCAATC 12111 |||||||||||| | |||| ||| ||| || | | | ||||| || ||||| Sbjct 5785 CGCTGGTAGGGTGTTCTATGGTGGCTTCAGCGGAGACGTCTTAGATGGAGACAGCCAATC 5726 Query 12112 GCCTAGACTTGTTTCCTACATCTTGTTTAGCCAATTGGTAGACAGCCCAGCAGATATTGT 12171 || ||| | || ||||||||||| ||| | |||| |||| | | | || || | Sbjct 5725 ACCAAGAATGACCTCTTACATCTTGTTCAGCAAGCTGGTTGACAACATAACCGACATAGG 5666 Query 12172 GAACTGCTACCAAGATGGTGATCCTACCAGTACAGAAGAGCCAGAACTAGTAGATACTGA 12231 || ||||| |||||||| || || || | || ||||| |||| | || || Sbjct 5665 CAAGTGCTATCAAGATGGGGACCCAACGTCGAAGGACACCCCAGATATAGTTGCGACAGA 5606 Query 12232 TGGTGGATTTATCCGTATCGAAGGTGCTTACGACATTATCAATTTGGTCAATGTCGGAAG 12291 ||||| |||||||| |||| || || |||| ||||| || |||| | || || || Sbjct 5605 CGGTGGTTTTATCCGACTCGATGGCGCATACGGCATTAAGAAGATGGTAAGCGTTGGTAG 5546 Query 12292 TGCTGTGATGGTAGTGGCAGCTAATGGTATATGGATGATCCAAGGTGGTAGTGACTATGG 12351 | || ||| | |||| ||||| | ||| || |||||||||||||||||||| Sbjct 5545 CCAACTTATAGTAATAGCAGAGAATGGCGTGTGGGGTATACAAGGTGGTAGTGACTATGG 5486 Query 12352 ATTCACTGCAACCAACTACCTCGTGACTAAGATCAGTGAGCATGGCTG-CTCTTCTCCTA 12410 || | || |||||| | || | ||| || || ||||| || | ||| | Sbjct 5485 GTTTAACGCTGAAAACTACTTGGTTAAGAAGTATAGCGAACATGGTTGTGTAAGCTCGT- 5427 Query 12411 ATTCCGTAGTGGTTGTTGACAACAGTTTCATGTATTGGGGTGATGATGGTATTTAC 12466 ||||||| | ||||| |||| | | ||||||||||| || ||||| ||| Sbjct 5426 CCAGCGTAGTGTTGGTTGATAACACAGTGCTATATTGGGGTGACGACGGTATATAC 5371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161505976381076