Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4197 125 7e-24 >seq4197 Length=36674 Score = 125 bits (138), Expect = 7e-24 Identities = 234/333 (70%), Gaps = 12/333 (4%) Strand=Plus/Plus Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 |||||||| ||||| ||||| ||||||| ||| | | | |||||| ||||| | ||| Sbjct 23252 CTATCCGCCACAAACTCTATGTATTGGCTCATGAGCACACCGTTCATCCCTATCA-ACGC 23310 Query 16856 ACCGGA-AGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAA-TAATA 16912 | || || || || || || || | |||||| | ||||||||||| | || | Sbjct 23311 GCAGGGCAGCGCGTCGCACACGAACTCCCT-CTCTATCTCCACCGCTTCCTTTACTATTC 23369 Query 16913 CTAGCAACTCGTTCCTC-GGACGGTGTATGTT--TAAGATGTTTAAACATCAGACATGCG 16969 || | ||| |||||||| ||| | | |||| | || | | | || ||||| ||| Sbjct 23370 CTTG-AACCCGTTCCTCCGGAAGCT---TGTTCCTCAGTAACTCATAGATGAGACAAGCG 23425 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 |||||||| || || || ||||| | | ||| | ||||| || || || | || ||| Sbjct 23426 AAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGC 23485 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 ||| |||||| || |||| ||||||||||||| ||| ||||| ||||| ||||| Sbjct 23486 ATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCT 23545 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 || ||| | ||||| || | || || || ||| Sbjct 23546 TCAACGCAGGCAAAAGCAACTATGCGCTCAGCG 23578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515038130383920