Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 107 2e-18
>seq4197
Length=36674
Score = 107 bits (118), Expect = 2e-18
Identities = 396/613 (65%), Gaps = 13/613 (2%)
Strand=Plus/Plus
Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193
||| |||||||||||||| | || ||||| | || || ||||| || || || ||
Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478
Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252
||| ||||| || || |||||||| ||||||||||| | |||| || |||||| ||||
Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGA 23537
Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC---ATAACCGGCGCTGTCAT 24309
| || ||||| || ||||| |||| | | || | | | ||| |||
Sbjct 23538 AGATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA- 23596
Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369
||||| | ||||| ||||| ||||| | ||| || | || || || || |
Sbjct 23597 --ATCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654
Query 24370 TAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 24428
||||| || || || || | ||| || || || | | ||| || |||
Sbjct 23655 GGAAGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTAC 23713
Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488
||||| || || || || || || || || || || |||||||| | |||||||| |
Sbjct 23714 ATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAA 23773
Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548
| ||| | || | || | | || | ||| || ||| || ||||| ||||
Sbjct 23774 ACCTGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCT 23833
Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTC 24605
|| || || || | ||||| ||||| | || || || | ||||| || | |
Sbjct 23834 GCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCC 23893
Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665
|||| | || ||||| || | || || || || | ||||| || || || || |||
Sbjct 23894 CAATGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCC 23953
Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725
|| |||||||| | ||| ||| | |||| | || || || ||| |||| || |||
Sbjct 23954 TTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGA 24013
Query 24726 TTTTTTGCAAGGA 24738
|| |||||||
Sbjct 24014 TTGGAGGCAAGGA 24026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590845063377120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |