Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq184 89.7 4e-13 seq9434 86.0 5e-12 >seq184 Length=120086 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||| ||||| || ||| ||||||| ||||||| || || || ||| ||| ||| | Sbjct 5223 AAAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATC 5282 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | | || | ||| ||| || || || ||||| | || ||| Sbjct 5283 CTCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGA 5342 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 || ||| | || ||||| || || || || || || ||| | ||| | |||||||| Sbjct 5343 CCAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTA 5402 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||| ||||||||||| || || ||| ||||| Sbjct 5403 CAATATCCAGAAGGAATCGACGCTCCACCTGGTG 5436 >seq9434 Length=50679 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | || |||||||| || |||||||| ||| || ||| | | Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| |||||| || || ||||| | || || || Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || |||||||| || || |||||||| ||| | ||| | || ||||| || Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTATAAC 44758 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || || |||||| | || | || | ||||| || Sbjct 44757 ATTCAGAAGGAGTCCACCCTTCACCTCGTCCTTCGTCTCCGAGGTGG 44711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | ||||| |||| || |||||||| || || || | Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| |||||| |||||||||||| | || || || Sbjct 45106 AGACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGACCA 45047 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 |||||||| |||||||| || || ||||| |||||| | | |||| || || ||| Sbjct 45046 GCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTA--GCTGACTAC 44989 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| |||||||| ||||| ||||| |||| Sbjct 44988 AATATCCAGAAGGAGTCTACACTTCATCTGGT 44957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426312625600070