Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq48644 127 2e-24 seq45117 127 2e-24 seq10588 107 2e-18 seq4209 107 2e-18 seq9434 95.1 1e-14 seq1077 87.8 2e-12 seq87 84.2 2e-11 >seq48644 Length=2856 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || ||||||||||||||||| ||||| || Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||||||||| || | || || | |||||||||| || Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| |||||| | | ||| || || | || Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| || ||||| ||||||| ||||| ||||| || ||||| || Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || ||||||||||||||||| ||||| || Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||||||||| || | || || | |||||||||| || Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| |||||| | | ||| || || | || Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| || ||||| ||||||| ||||| ||||| || ||||| || Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656 >seq10588 Length=20159 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | ||| | ||||||||||| || || || || || || Sbjct 1253 CCACCACGCAGACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCT 1312 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | ||||| ||||| || || ||| | ||||| |||||||||||| ||| Sbjct 1313 AGGGTTCTTCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGA 1372 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | ||| || || | ||| Sbjct 1373 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACC 1432 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| || || | ||| |||||||| || ||||| Sbjct 1433 TCCAAGGTGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||| || | || | || |||||||| ||||| || || || || Sbjct 1024 TCCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGC 1083 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | ||||| ||||| || || ||| | || | | ||| ||||| || Sbjct 1084 AAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGG 1143 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| |||||| ||||| | | | ||||||| | ||| Sbjct 1144 AATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATAGTATCAGAGCTCTCAAC 1203 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || || ||||| || ||||| Sbjct 1204 CTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTAACAAAGATCTGCAT 1251 >seq4209 Length=73032 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| |||||||| || ||||||||||| || Sbjct 7 CCACCACGAAGACGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGCA 66 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | ||||| ||||| ||||||||| | || || | ||||||||| || Sbjct 67 AGGGTTCTACCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGG 126 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | | || || | ||| Sbjct 127 ATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACC 186 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| || ||||| ||||| || ||||| Sbjct 187 TCTAGGGTTATGGTCTTTCCGGTCAATGTTTTCACAAAGATCTGCAT 233 >seq9434 Length=50679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| ||||||||||| || || || || || | |||||||| || || || Sbjct 44741 GTGGACTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGCCATCCTCCAGTTGCTTTCCA 44800 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||||||||| || | ||||||||||| || || || Sbjct 44801 GCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATTTTAGCCTTA 44860 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| |||||| | || |||| ||| ||||| || || || || || Sbjct 44861 ACATTGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGATGGTTTTTCCAGTCAATGTC 44920 Query 21159 TTGACAAATATTTGCAT 21175 || |||||||||||||| Sbjct 44921 TTCACAAATATTTGCAT 44937 >seq1077 Length=76872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | || ||||| ||| | || |||||||| |||| ||| ||||| || Sbjct 52849 CCACCACGAAGACGGATCACCAGATGAATCGTCGACTCCTTCTGAACGTTGTAGTCGGCG 52790 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || || || |||||||| || || || || | ||||||||||||| || Sbjct 52789 AGCGTACGG---TCTTCAAGCTGTTTTCCAGCGTATATTATCCTCTGCTGGTCCAGTGGG 52733 Query 21069 ACGCCTTCCTTGTC 21082 |||||||||||||| Sbjct 52732 ACGCCTTCCTTGTC 52719 >seq87 Length=177581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||| | ||||||| || | ||||| ||||| || || ||||| || | Sbjct 55349 TTCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTG 55408 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || | | || |||| || || || ||| | || || ||||| ||||| || Sbjct 55409 CAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGG 55468 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| ||||| || || | | | | || || | ||| Sbjct 55469 GAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCAA 55528 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| || |||||||| |||| || |||||||| |||||||| Sbjct 55529 CTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| |||||||||||| |||||||||||||| || || || | | || || || || Sbjct 54463 TGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTGC 54522 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || |||||| | || ||||| |||||||| || | || ||||| || ||| ||| Sbjct 54523 TTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTTT 54582 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | | || || | ||| ||| | || || ||||| || || Sbjct 54583 GCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCAAGAGTTATTGTCTTACCAGTG 54642 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | ||||| ||||| |||||||| Sbjct 54643 AGGGTTTTCACAAAGATTTGCAT 54665 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||||| || || || || || |||||||| || || Sbjct 55123 CCACCACGAAGACGGAGCACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCA 55182 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | || || || || ||||| ||| | || | |||||||||||| || Sbjct 55183 AGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA 55242 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || ||||| ||| || | | | | || ||| | ||| | Sbjct 55243 ATTCCCTCCTTATCTTGAATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCAACT 55302 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||||| |||||||| || || || || ||||| || |||||| Sbjct 55303 TCAAGAGTAATAGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATT 55350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420264531199304