Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4197 210 2e-49 seq184 129 6e-25 seq48644 123 3e-23 seq45117 123 3e-23 seq9434 105 7e-18 seq10588 104 2e-17 seq1982 100 3e-16 seq4213 93.3 4e-14 seq4209 93.3 4e-14 seq87 89.7 5e-13 >seq4197 Length=36674 Score = 210 bits (232), Expect = 2e-49 Identities = 405/589 (69%), Gaps = 20/589 (3%) Strand=Plus/Minus Query 116612 ATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTC 116671 || ||||| || | || || ||| ||| ||||| || |||||||| || |||||| Sbjct 23997 ATGTTCCCGATCAAGTATCCTCGCATATGGGAGATGTATAAGAAGGCCGAAGCCTCGTTC 23938 Query 116672 TGGACCGTCGAGGAGGTGGACCTGTC-CAAGGACACGAGCGACTGGGAG----CGCTTGA 116726 ||||||| ||||||||| ||||| || |||| | | | | |||||| | || | Sbjct 23937 TGGACCGCCGAGGAGGTTGACCTCTCACAAGATCTCCGTC-ATTGGGAGGAAACCCT--A 23881 Query 116727 ACGACA-ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 || | | ||| || || ||| || || || ||||| ||||| ||| |||||| Sbjct 23880 ACTTCTGATGAGAAGCACTTTATCTCTCATGTCCTCGCCTTCTTCGCAGCCTCCGACGGG 23821 Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 ||||| ||||||||| | | | | ||| ||||| | ||||| ||||||| || Sbjct 23820 ATCGTGCTCGAGAATCTCGCTGGGAGGTTCATGAAGGAGATCCAGGTTTCCGAGGCTCGC 23761 Query 116846 TGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC 116905 |||||||||||| |||||||| || ||||| | ||||| |||||||| | || || Sbjct 23760 GCCTTCTACGGCTTCCAGATCGCAATCGAGAATATCCACTCTGAAATGTA--CAGCCTTC 23703 Query 116906 ATC--GACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGA 116963 || || || | || ||| ||||||| ||| | || |||||||||| | Sbjct 23702 TTCTCGAAACCCTGATTCGAGACTCGTCCGAGAAGCACCGGCTCTTCCACGCCATCGATA 23643 Query 116964 CGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC--CGGCAGAGA 117021 | | || |||| |||| ||||| |||||||| |||||||| | | ||||| Sbjct 23642 CTGTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCGCTGGATTGATTCCGCAGAAT 23583 Query 117022 GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGG 117081 |||||| |||||| | || || || || ||| || || ||||||| || || Sbjct 23582 -----CCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTGG 23528 Query 117082 CAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAG 117141 || ||| ||| ||||||||||| || || || || || ||||| || || || ||| Sbjct 23527 AAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTGGACTAACCTTCTC 23468 Query 117142 CAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 |||||| | |||||| | ||||| || |||| ||||| || || ||| Sbjct 23467 GAACGAGTTGATCTCCCGCGACGAAGGCTTGCACTGCGATTTCGCTTGT 23419 >seq184 Length=120086 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| || ||||| || || || ||| |||| |||||| | Sbjct 5223 AAAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATC 5282 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | | | |||| ||| || | ||||| || || || || | || Sbjct 5283 CTCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGA 5342 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| || |||| ||| || || ||||| || || | || |||||| ||| || Sbjct 5343 CCAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTA 5402 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||||||||| | ||||| || || ||| Sbjct 5403 CAATATCCAGAAGGAATCGACGCTCCACCTGGTG 5436 >seq48644 Length=2856 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| || || || || || || ||| | || || ||| | Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | | || | || || | ||||| || |||||||| ||||| Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| ||||||||||| || |||| || |||||| ||||||| Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| || |||||| | || || || || ||| Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTG 1851 >seq45117 Length=3449 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| || || || || || || ||| | || || ||| | Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | | || | || || | ||||| || |||||||| ||||| Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| ||||||||||| || |||| || |||||| ||||||| Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| || |||||| | || || || || ||| Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTG 2444 >seq9434 Length=50679 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || || || |||||||| || | || ||||| | Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| |||||| | || ||||| || ||||| | ||||| Sbjct 45106 AGACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGACCA 45047 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| ||||||||| || || || || || || || | ||| || || |||||||| Sbjct 45046 GCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACAA 44987 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || ||||| || | ||| || | || || Sbjct 44986 TATCCAGAAGGAGTCTACACTTCATCTGGTCCTTCGCCTGCGTGGTGG 44939 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || | || || |||||||||||| | || || ||| | | Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||||| ||||| || || || || | |||||| Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || || ||||| || | ||||| || || || ||| Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTATAAC 44758 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| |||| || || || || Sbjct 44757 ATTCAGAAGGAGTCCACCCTTCACCTCGT 44729 >seq10588 Length=20159 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| || || || |||||| | || || || | || Sbjct 1479 ATGCAGATCTTTGTCAAGACGCTCACTGGAAAGACTATCACCTTGGAGGTTGAGAGCTCC 1420 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| ||||| || ||| ||||||| Sbjct 1419 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 1361 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || ||||| || || | | ||||| || ||||| Sbjct 1360 GCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGAAGAACCCTAGCTGATTACAA 1301 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || ||||| ||| Sbjct 1300 TATCCAGAAGGAGTCCACCCTTCATCTTGTG 1270 >seq1982 Length=56187 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| |||||||||| |||||||||| ||| || || ||||| || Sbjct 32284 GACAAGGAGGGAATCCCACCGGACCAGCAGCGACTCATCTTCGCCGGGAAGCAGCTCGAA 32343 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || || || ||||||||||||||||||||| | ||||| || Sbjct 32344 GACGGCCGTACTCTTGCCGACTACAACATCCAGAAGGAATCGACGCTTCA 32393 >seq4213 Length=62956 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCA-CGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || ||||| || ||| | ||||| ||| |||| || || || ||| || | || || | Sbjct 19561 AAGATGCAGATCTTCATGAAAACCTTCAACGGGGAAGACGATAACCCTCTAGGTTGAGTC 19620 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | | | |||| || ||| ||||| ||||| ||||| |||| Sbjct 19621 TTCCGACACCATCGATAATGTGAAGGCCAAGATTTAGGACAAGGAGGGAATCCCACCGGA 19680 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||||||||||| ||| || || |||| | | ||| | || || |||||| Sbjct 19681 CCAACAACGACTCATCTTCGCCGGAAAGTAGCTCAAAGGCGACCATACTCTTGCCGACTA 19740 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||||| ||||| || || || Sbjct 19741 CAACATCCAAAAGGAATAGACGCTTCACCTGGT 19773 >seq4209 Length=73032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || || ||||| ||| | || || || | | Sbjct 233 ATGCAGATCTTTGTGAAAACATTGACCGGAAAGACCATAACCCTAGAGGTTGAGAGCTCA 174 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || || ||||| | |||||| Sbjct 173 GACACCATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAG 114 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| |||||||| ||||| || || | | ||||| ||||| ||| Sbjct 113 CAGCGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGTAGAACCCTTGCTGACTATAAC 54 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 53 ATCCAGAAGGAGTCTACTCTCCACCTGGT 25 >seq87 Length=177581 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| || |||||| |||| || || | || Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| || ||||| ||| | ||||| Sbjct 55517 GACACAATTGACAACG-TAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCA 55459 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | ||||||| || || || || |||| || | ||||| || || || || Sbjct 55458 ACAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAA 55399 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || || | ||| | || ||||||| || Sbjct 55398 TATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGG 55351 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || |||||||| | || |||||| | | Sbjct 55805 ATGCAGATCTTCGTGAAAACACTTACAGGTAAGACCATCACTCTTGAGGTCGAAAGCTCT 55746 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||||| || || ||||| || || | || ||| Sbjct 55745 GACACAATCGACAATGTTAAGGCTAAAATTCAAGATAAGGAGGGGATTCCTCCAGATCAG 55686 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || || || || || || |||| | ||||| ||||| || Sbjct 55685 CAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGAAGAACCCTAGCTGACTATAAT 55626 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 55625 ATCCAGAAGGAGTCCACACTCCACCTGGT 55597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512723001617440