Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 210 2e-49
seq184 129 6e-25
seq48644 123 3e-23
seq45117 123 3e-23
seq9434 105 7e-18
seq10588 104 2e-17
seq1982 100 3e-16
seq4213 93.3 4e-14
seq4209 93.3 4e-14
seq87 89.7 5e-13
>seq4197
Length=36674
Score = 210 bits (232), Expect = 2e-49
Identities = 405/589 (69%), Gaps = 20/589 (3%)
Strand=Plus/Minus
Query 116612 ATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTC 116671
|| ||||| || | || || ||| ||| ||||| || |||||||| || ||||||
Sbjct 23997 ATGTTCCCGATCAAGTATCCTCGCATATGGGAGATGTATAAGAAGGCCGAAGCCTCGTTC 23938
Query 116672 TGGACCGTCGAGGAGGTGGACCTGTC-CAAGGACACGAGCGACTGGGAG----CGCTTGA 116726
||||||| ||||||||| ||||| || |||| | | | | |||||| | || |
Sbjct 23937 TGGACCGCCGAGGAGGTTGACCTCTCACAAGATCTCCGTC-ATTGGGAGGAAACCCT--A 23881
Query 116727 ACGACA-ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785
|| | | ||| || || ||| || || || ||||| ||||| ||| ||||||
Sbjct 23880 ACTTCTGATGAGAAGCACTTTATCTCTCATGTCCTCGCCTTCTTCGCAGCCTCCGACGGG 23821
Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845
||||| ||||||||| | | | | ||| ||||| | ||||| ||||||| ||
Sbjct 23820 ATCGTGCTCGAGAATCTCGCTGGGAGGTTCATGAAGGAGATCCAGGTTTCCGAGGCTCGC 23761
Query 116846 TGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC 116905
|||||||||||| |||||||| || ||||| | ||||| |||||||| | || ||
Sbjct 23760 GCCTTCTACGGCTTCCAGATCGCAATCGAGAATATCCACTCTGAAATGTA--CAGCCTTC 23703
Query 116906 ATC--GACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGA 116963
|| || || | || ||| ||||||| ||| | || |||||||||| |
Sbjct 23702 TTCTCGAAACCCTGATTCGAGACTCGTCCGAGAAGCACCGGCTCTTCCACGCCATCGATA 23643
Query 116964 CGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC--CGGCAGAGA 117021
| | || |||| |||| ||||| |||||||| |||||||| | | |||||
Sbjct 23642 CTGTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCGCTGGATTGATTCCGCAGAAT 23583
Query 117022 GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGG 117081
|||||| |||||| | || || || || ||| || || ||||||| || ||
Sbjct 23582 -----CCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTGG 23528
Query 117082 CAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAG 117141
|| ||| ||| ||||||||||| || || || || || ||||| || || || |||
Sbjct 23527 AAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTGGACTAACCTTCTC 23468
Query 117142 CAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190
|||||| | |||||| | ||||| || |||| ||||| || || |||
Sbjct 23467 GAACGAGTTGATCTCCCGCGACGAAGGCTTGCACTGCGATTTCGCTTGT 23419
>seq184
Length=120086
Score = 129 bits (142), Expect = 6e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||| ||||| || ||||| ||||| || ||||| || || || ||| |||| |||||| |
Sbjct 5223 AAAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATC 5282
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||||| | | | | | |||| ||| || | ||||| || || || || | ||
Sbjct 5283 CTCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGA 5342
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||||||| || |||| ||| || || ||||| || || | || |||||| ||| ||
Sbjct 5343 CCAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTA 5402
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||| ||||||||||| | ||||| || || |||
Sbjct 5403 CAATATCCAGAAGGAATCGACGCTCCACCTGGTG 5436
>seq48644
Length=2856
Score = 123 bits (136), Expect = 3e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || ||||| || || || || || || ||| | || || ||| |
Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | | | || | || || | ||||| || |||||||| |||||
Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || ||||||| ||| ||||||||||| || |||| || |||||| |||||||
Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||| || |||||| | || || || || |||
Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTG 1851
>seq45117
Length=3449
Score = 123 bits (136), Expect = 3e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || ||||| || || || || || || ||| | || || ||| |
Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | | | || | || || | ||||| || |||||||| |||||
Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || ||||||| ||| ||||||||||| || |||| || |||||| |||||||
Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||| || |||||| | || || || || |||
Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTG 2444
>seq9434
Length=50679
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || ||||| || || || |||||||| || | || ||||| |
Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||||| |||||| | || ||||| || ||||| | |||||
Sbjct 45106 AGACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGACCA 45047
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||| ||||||||| || || || || || || || | ||| || || ||||||||
Sbjct 45046 GCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACAA 44987
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| | || || ||||| || | ||| || | || ||
Sbjct 44986 TATCCAGAAGGAGTCTACACTTCATCTGGTCCTTCGCCTGCGTGGTGG 44939
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||||||||| || || || | || || |||||||||||| | || || ||| | |
Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | |||| ||||||| ||||| || || || || | ||||||
Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || || || || ||||| || | ||||| || || || |||
Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTATAAC 44758
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||||||| |||| || || || ||
Sbjct 44757 ATTCAGAAGGAGTCCACCCTTCACCTCGT 44729
>seq10588
Length=20159
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || |||||||| || || || |||||| | || || || | ||
Sbjct 1479 ATGCAGATCTTTGTCAAGACGCTCACTGGAAAGACTATCACCTTGGAGGTTGAGAGCTCC 1420
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || || | ||||| ||||| || ||| |||||||
Sbjct 1419 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 1361
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| || || || ||||| || || | | ||||| || |||||
Sbjct 1360 GCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGAAGAACCCTAGCTGATTACAA 1301
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||| |||| || ||||| |||
Sbjct 1300 TATCCAGAAGGAGTCCACCCTTCATCTTGTG 1270
>seq1982
Length=56187
Score = 100 bits (110), Expect = 3e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| ||||| |||||||||| |||||||||| ||| || || ||||| ||
Sbjct 32284 GACAAGGAGGGAATCCCACCGGACCAGCAGCGACTCATCTTCGCCGGGAAGCAGCTCGAA 32343
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||| || || || ||||||||||||||||||||| | ||||| ||
Sbjct 32344 GACGGCCGTACTCTTGCCGACTACAACATCCAGAAGGAATCGACGCTTCA 32393
>seq4213
Length=62956
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/213 (70%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCA-CGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
|| ||||| || ||| | ||||| ||| |||| || || || ||| || | || || |
Sbjct 19561 AAGATGCAGATCTTCATGAAAACCTTCAACGGGGAAGACGATAACCCTCTAGGTTGAGTC 19620
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | | | |||| || ||| ||||| ||||| ||||| ||||
Sbjct 19621 TTCCGACACCATCGATAATGTGAAGGCCAAGATTTAGGACAAGGAGGGAATCCCACCGGA 19680
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||| ||||||||||||| ||| || || |||| | | ||| | || || ||||||
Sbjct 19681 CCAACAACGACTCATCTTCGCCGGAAAGTAGCTCAAAGGCGACCATACTCTTGCCGACTA 19740
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||| ||||| ||||| || || ||
Sbjct 19741 CAACATCCAAAAGGAATAGACGCTTCACCTGGT 19773
>seq4209
Length=73032
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| | || || || ||||| ||| | || || || | |
Sbjct 233 ATGCAGATCTTTGTGAAAACATTGACCGGAAAGACCATAACCCTAGAGGTTGAGAGCTCA 174
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| || || ||||| | ||||||
Sbjct 173 GACACCATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAG 114
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| |||||||| ||||| || || | | ||||| ||||| |||
Sbjct 113 CAGCGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGTAGAACCCTTGCTGACTATAAC 54
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || || || || ||
Sbjct 53 ATCCAGAAGGAGTCTACTCTCCACCTGGT 25
>seq87
Length=177581
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || ||||| || |||||| |||| || || | ||
Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || || | ||||| || ||||| ||| | |||||
Sbjct 55517 GACACAATTGACAACG-TAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCA 55459
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| | ||||||| || || || || |||| || | ||||| || || || ||
Sbjct 55458 ACAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAA 55399
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||| |||| || || | ||| | || ||||||| ||
Sbjct 55398 TATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGG 55351
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || || || || |||||||| | || |||||| | |
Sbjct 55805 ATGCAGATCTTCGTGAAAACACTTACAGGTAAGACCATCACTCTTGAGGTCGAAAGCTCT 55746
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| ||||||| || || ||||| || || | || |||
Sbjct 55745 GACACAATCGACAATGTTAAGGCTAAAATTCAAGATAAGGAGGGGATTCCTCCAGATCAG 55686
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||| | || |||| || || || || || || |||| | ||||| ||||| ||
Sbjct 55685 CAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGAAGAACCCTAGCTGACTATAAT 55626
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| || || || ||
Sbjct 55625 ATCCAGAAGGAGTCCACACTCCACCTGGT 55597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 512723001617440
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