Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 123 4e-23
seq87 113 7e-20
seq36 89.7 8e-13
seq35801 84.2 3e-11
seq22012 84.2 3e-11
>seq9434
Length=50679
Score = 123 bits (136), Expect = 4e-23
Identities = 175/245 (71%), Gaps = 1/245 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || ||||||||||| || || || | ||| ||||| |
Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||||| || ||||| || || ||||| || || || || || ||||| |||
Sbjct 46017 GACACAATTGACAACGTAAAAGCTAAGATCCAAGACAAGGAGGGAATTCCCCCTGACCAA 45958
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| ||||| ||||| ||||| ||| |||||||| | | || | | ||||| |||
Sbjct 45957 CAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTACAAT 45898
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777
||||| ||||| || || | || ||||| | ||| | |||||||||| | | ||||
Sbjct 45897 ATTCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCAGAGGTGGTATGCAGATATTC 45838
Query 124778 ATAAA 124782
||||
Sbjct 45837 GTAAA 45833
Score = 111 bits (122), Expect = 2e-19
Identities = 165/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | |||||| | || || ||||| || || | ||| ||||| |
Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||||| ||| | || |||||||| || || ||||| || || ||||| ||
Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || ||||| ||||| ||| | |||||| | || || ||| ||||||||
Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTATAAC 44758
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772
||||| || || || || | || | || | ||| | ||||||||| || ||
Sbjct 44757 ATTCAGAAGGAGTCCACCCTTCACCTCGTCCTTCGTCTCCGAGGTGGTTTTTAA 44704
Score = 105 bits (116), Expect = 1e-17
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
|||||| || ||| | || || || || || ||||| |||||| | ||| | || ||
Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
| || || ||| ||| | || ||||| ||||||||||||||||| |||||||| |
Sbjct 45106 A-GACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGACC 45048
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| ||||| || || ||||| || || ||| | || ||| | || ||| ||| || || |
Sbjct 45047 AGCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACA 44988
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||| || || || || || | ||| |||| | || | || ||||| ||
Sbjct 44987 ATATCCAGAAGGAGTCTACACTTCATCTGGTCCTTCGCCTGCGTGGTGGGAT 44936
>seq87
Length=177581
Score = 113 bits (124), Expect = 7e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| ||| | ||||| ||||| ||||| || || || | || |||| |||
Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| |||||| || |||| || || || || || ||||| || || ||||| ||
Sbjct 55517 -GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCA 55459
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| ||||| || ||||| || || ||||| || ||| |||| ||| | | |||||||||
Sbjct 55458 ACAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAA 55399
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||| || || ||||| || | || ||||| | ||| | | ||||| ||
Sbjct 55398 TATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGGAAT 55348
Score = 104 bits (114), Expect = 4e-17
Identities = 125/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||||| ||| | || ||| ||||| |||||||| || || ||||| |||||
Sbjct 54833 GACACAATTGACAATGTGAAGGCGAAGATTCAGGATAAAGAGGGAATTCCACCAGATCAG 54774
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | ||||||||||| || || | || ||| | | ||||| | |||||||||
Sbjct 54773 CAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACATTGGCAGATTATAAC 54714
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| || |||||| | || |||| | ||| | || || |||||
Sbjct 54713 ATTCAAAAGGAGTCAACTCTCCACCTGGTCCTTCGTCTTCGTGGAGGTAT 54664
Score = 100 bits (110), Expect = 4e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
|||||| || ||| | ||||| | || ||||| ||||| ||| | || |||| |||
Sbjct 55350 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACTATTACTCTTGAAGTTGAGAGCTC 55291
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||| || ||| || | ||| || ||||||||||| || || || || || || |
Sbjct 55290 -TGACACCATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATTCCTCCAGACC 55232
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || || | || ||||| || || ||| | || ||| | | || | | |||||||
Sbjct 55231 AGCAGAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATA 55172
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| || || ||||||||||| |||||||||| | ||| | || ||||||||
Sbjct 55171 ACATCCAGAAAGAATCAACCCTGCATTTGGTGCTCCGTCTTCGTGGTGGTAT 55120
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || ||||| ||||| || || || ||| | ||| | ||| |
Sbjct 55805 ATGCAGATCTTCGTGAAAACACTTACAGGTAAGACCATCACTCTTGAGGTCGAAAGCTCT 55746
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| ||||| ||| | || |||||||||||||| || || || || || |||||
Sbjct 55745 GACACAATCGACAATGTTAAGGCTAAAATTCAAGATAAGGAGGGGATTCCTCCAGATCAG 55686
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||| || ||||| ||||| ||| | || || | |||| ||| || ||||||
Sbjct 55685 CAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGAAGAACCCTAGCTGACTATAAT 55626
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || || | || ||||| | ||| | || || || ||
Sbjct 55625 ATCCAGAAGGAGTCCACACTCCACCTGGTTCTCCGTCTTCGTGGAGGGAT 55576
>seq36
Length=331580
Score = 89.7 bits (98), Expect = 8e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686
|||| || || |||||||| || |||||||| || ||||| || ||||| || |||||||
Sbjct 256852 TTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAGAGGCTGATATTTGCTGGTAAACAAT 256911
Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735
| |||||| | || || | | ||||| || || || |||||||||||
Sbjct 256912 TGGAGGATGGCCGCACCCTTGCTGATTACAACATCCAGAAAGAATCAAC 256960
>seq35801
Length=5147
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 124638 GAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGT 124697
||||| || ||||| || ||||||||||| || ||||| || || ||| | |||||| |
Sbjct 1 GAAGGGATCCCACCCGACCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAGGATGGC 60
Query 124698 CGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTA 124757
|| ||||||| ||||| || ||||| || || || || | || | || || ||| |
Sbjct 61 CGTACATTAGCGGATTACAACATTCAGAAGGAGTCTACACTCCACCTTGTGTTGCGTCTT 120
Query 124758 CGAGGTGGTAT 124768
|| ||||| ||
Sbjct 121 CGTGGTGGAAT 131
>seq22012
Length=9549
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 124638 GAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGT 124697
||||| || ||||| || ||||||||||| || ||||| || || ||| | |||||| |
Sbjct 6196 GAAGGGATCCCACCCGACCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAGGATGGC 6137
Query 124698 CGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTA 124757
|| ||||||| ||||| || ||||| || || || || | || | || || ||| |
Sbjct 6136 CGTACATTAGCCGATTACAACATTCAGAAGGAGTCTACCCTCCACCTTGTGTTGCGTCTT 6077
Query 124758 CGAGGTGGTAT 124768
|| ||||| ||
Sbjct 6076 CGTGGTGGAAT 6066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751795872339200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |