Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9434 123 4e-23 seq87 113 7e-20 seq36 89.7 8e-13 seq35801 84.2 3e-11 seq22012 84.2 3e-11 >seq9434 Length=50679 Score = 123 bits (136), Expect = 4e-23 Identities = 175/245 (71%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||||||||| || || || | ||| ||||| | Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || ||||| || || ||||| || || || || || ||||| ||| Sbjct 46017 GACACAATTGACAACGTAAAAGCTAAGATCCAAGACAAGGAGGGAATTCCCCCTGACCAA 45958 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||| ||||| ||||| ||| |||||||| | | || | | ||||| ||| Sbjct 45957 CAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTACAAT 45898 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||||| ||||| || || | || ||||| | ||| | |||||||||| | | |||| Sbjct 45897 ATTCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCAGAGGTGGTATGCAGATATTC 45838 Query 124778 ATAAA 124782 |||| Sbjct 45837 GTAAA 45833 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | |||||| | || || ||||| || || | ||| ||||| | Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | || |||||||| || || ||||| || || ||||| || Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| ||| | |||||| | || || ||| |||||||| Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTATAAC 44758 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||||| || || || || | || | || | ||| | ||||||||| || || Sbjct 44757 ATTCAGAAGGAGTCCACCCTTCACCTCGTCCTTCGTCTCCGAGGTGGTTTTTAA 44704 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | || || || || || ||||| |||||| | ||| | || || Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || ||| ||| | || ||||| ||||||||||||||||| |||||||| | Sbjct 45106 A-GACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGACC 45048 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||| || || ||||| || || ||| | || ||| | || ||| ||| || || | Sbjct 45047 AGCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACA 44988 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || || || || | ||| |||| | || | || ||||| || Sbjct 44987 ATATCCAGAAGGAGTCTACACTTCATCTGGTCCTTCGCCTGCGTGGTGGGAT 44936 >seq87 Length=177581 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| ||||| ||||| || || || | || |||| ||| Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || |||| || || || || || ||||| || || ||||| || Sbjct 55517 -GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCA 55459 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || ||||| || || ||||| || ||| |||| ||| | | ||||||||| Sbjct 55458 ACAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAA 55399 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || ||||| || | || ||||| | ||| | | ||||| || Sbjct 55398 TATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGGAAT 55348 Score = 104 bits (114), Expect = 4e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || ||| ||||| |||||||| || || ||||| ||||| Sbjct 54833 GACACAATTGACAATGTGAAGGCGAAGATTCAGGATAAAGAGGGAATTCCACCAGATCAG 54774 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | || ||| | | ||||| | ||||||||| Sbjct 54773 CAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACATTGGCAGATTATAAC 54714 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || |||||| | || |||| | ||| | || || ||||| Sbjct 54713 ATTCAAAAGGAGTCAACTCTCCACCTGGTCCTTCGTCTTCGTGGAGGTAT 54664 Score = 100 bits (110), Expect = 4e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | || ||||| ||||| ||| | || |||| ||| Sbjct 55350 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACTATTACTCTTGAAGTTGAGAGCTC 55291 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || ||| || | ||| || ||||||||||| || || || || || || | Sbjct 55290 -TGACACCATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATTCCTCCAGACC 55232 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| || || ||| | || ||| | | || | | ||||||| Sbjct 55231 AGCAGAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATA 55172 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||||||||||| |||||||||| | ||| | || |||||||| Sbjct 55171 ACATCCAGAAAGAATCAACCCTGCATTTGGTGCTCCGTCTTCGTGGTGGTAT 55120 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || ||||| ||||| || || || ||| | ||| | ||| | Sbjct 55805 ATGCAGATCTTCGTGAAAACACTTACAGGTAAGACCATCACTCTTGAGGTCGAAAGCTCT 55746 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || |||||||||||||| || || || || || ||||| Sbjct 55745 GACACAATCGACAATGTTAAGGCTAAAATTCAAGATAAGGAGGGGATTCCTCCAGATCAG 55686 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| ||||| ||| | || || | |||| ||| || |||||| Sbjct 55685 CAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGAAGAACCCTAGCTGACTATAAT 55626 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || ||||| | ||| | || || || || Sbjct 55625 ATCCAGAAGGAGTCCACACTCCACCTGGTTCTCCGTCTTCGTGGAGGGAT 55576 >seq36 Length=331580 Score = 89.7 bits (98), Expect = 8e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || |||||||| || |||||||| || ||||| || ||||| || ||||||| Sbjct 256852 TTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAGAGGCTGATATTTGCTGGTAAACAAT 256911 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 | |||||| | || || | | ||||| || || || ||||||||||| Sbjct 256912 TGGAGGATGGCCGCACCCTTGCTGATTACAACATCCAGAAAGAATCAAC 256960 >seq35801 Length=5147 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 124638 GAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGT 124697 ||||| || ||||| || ||||||||||| || ||||| || || ||| | |||||| | Sbjct 1 GAAGGGATCCCACCCGACCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAGGATGGC 60 Query 124698 CGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTA 124757 || ||||||| ||||| || ||||| || || || || | || | || || ||| | Sbjct 61 CGTACATTAGCGGATTACAACATTCAGAAGGAGTCTACACTCCACCTTGTGTTGCGTCTT 120 Query 124758 CGAGGTGGTAT 124768 || ||||| || Sbjct 121 CGTGGTGGAAT 131 >seq22012 Length=9549 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 124638 GAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGT 124697 ||||| || ||||| || ||||||||||| || ||||| || || ||| | |||||| | Sbjct 6196 GAAGGGATCCCACCCGACCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAGGATGGC 6137 Query 124698 CGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTA 124757 || ||||||| ||||| || ||||| || || || || | || | || || ||| | Sbjct 6136 CGTACATTAGCCGATTACAACATTCAGAAGGAGTCTACCCTCCACCTTGTGTTGCGTCTT 6077 Query 124758 CGAGGTGGTAT 124768 || ||||| || Sbjct 6076 CGTGGTGGAAT 6066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751795872339200