Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq48644 109 6e-19 seq45117 109 6e-19 seq9434 100 3e-16 seq184 96.9 4e-15 seq22012 95.1 1e-14 seq10588 93.3 5e-14 seq35801 91.5 2e-13 seq87 89.7 6e-13 seq1982 84.2 2e-11 seq39132 82.4 9e-11 >seq48644 Length=2856 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || || || || || |||| |||||||| || || ||||| Sbjct 1869 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAA 1928 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||||||||| ||| || ||| | | Sbjct 1929 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATT 1988 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | || || || || || ||||| || || || Sbjct 1989 GTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCAC 2048 Query 43172 AAAGATTTGCATTTT 43186 |||||| ||||| || Sbjct 2049 AAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || || || || || |||| |||||||| || || ||||| Sbjct 2462 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAA 2521 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||||||||| ||| || ||| | | Sbjct 2522 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATT 2581 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | || || || || || ||||| || || || Sbjct 2582 GTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCAC 2641 Query 43172 AAAGATTTGCATTTT 43186 |||||| ||||| || Sbjct 2642 AAAGATCTGCATCTT 2656 >seq9434 Length=50679 Score = 100 bits (110), Expect = 3e-16 Identities = 176/251 (70%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | |||||| || | ||| ||| || ||||||||||||||||| Sbjct 45851 CCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCA 45910 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || ||||| ||||| || || || || |||| || ||||| | || Sbjct 45911 AGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGA 45970 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| || ||| | ||| | | | ||||| ||| ||| Sbjct 45971 ATTCCCTCCTTGTCTTGGATCTTAGCTTTTA-CGTTGTCAATTGTGTCAGAGCT---TTC 46026 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA-CGC 43191 || |||| ||||| || ||||| ||||| || || || ||||| ||||| | || | Sbjct 46027 AACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATCTATAGAAC 46086 Query 43192 CGAATACAATG 43202 |||| | |||| Sbjct 46087 CGAAAAAAATG 46097 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| || |||||||| ||||| || | || || || ||||| ||||| || Sbjct 44746 CTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAA 44805 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | ||||||||| ||| |||| | | | | | Sbjct 44806 GATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCC-TGAATTTTAGCCTTAACAT 44864 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||| || || | ||||||||||| || || | |||| Sbjct 44865 TGTCGATTGTATCAGAGCT---TTCAACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCT 44921 Query 43168 TTACAAAGATTTGCAT 43183 | ||||| |||||||| Sbjct 44922 TCACAAATATTTGCAT 44937 >seq184 Length=120086 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || ||||||||||| || || || || | || |||||||||||||| ||||| Sbjct 5417 TCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAG 5358 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || || |||||||| | || | | ||||||||| ||| ||| || | | Sbjct 5357 ATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTG 5298 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| ||||| || |||| || || || || ||||| || || || || Sbjct 5297 TCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACG 5238 Query 43173 AAGATTTGCATTTTTACG 43190 || || ||||| ||| || Sbjct 5237 AAAATCTGCATCTTTGCG 5220 >seq22012 Length=9549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||||||||||| ||||| | || || |||||||||||||| || Sbjct 5877 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAG 5936 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | | ||||||||| | ||| | | |||||||||| ||| | || | |||| | Sbjct 5937 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCC-TGAATCTTCGCCTTGACATT 5995 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||| || |||| ||||| || || || |||| ||||| Sbjct 5996 ATCTATGGTGTCCGAGCT---TTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTT 6052 Query 43169 TACAAAGATTTGCATT 43184 || || || |||||| Sbjct 6053 AACGAATATCTGCATT 6068 >seq10588 Length=20159 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | ||| |||||| || |||||||||||||| || || | | Sbjct 1264 ACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCTAGGGTTCTTCC 1323 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || | ||||||||| | || | | |||||| Sbjct 1324 ATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTT 1383 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| || || | ||| | | | ||||| |||| || || || | | Sbjct 1384 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTC---TCAACCTCCAAGG 1439 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || |||||||| |||||||| ||||| Sbjct 1440 TGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 >seq35801 Length=5147 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||||||||||| ||||| | || || |||||||| ||||| || Sbjct 320 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAG 261 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | | ||||||||| | ||| | | |||||||||| ||| | || | |||| | Sbjct 260 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCC-TGAATCTTCGCCTTGACATT 202 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||| || |||| |||||||| || || || | ||||| Sbjct 201 ATCTATGGTGTCCGAGCT---TTCAACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTT 145 Query 43169 TACAAAGATTTGCATT 43184 || || || |||||| Sbjct 144 GACGAATATCTGCATT 129 >seq87 Length=177581 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| ||||| || || || || ||||| ||| | || || || ||| Sbjct 54463 TGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTGC 54522 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||| || || ||||||| |||||||| | ||| | | |||||| || ||||||| Sbjct 54523 TTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTTT 54582 Query 43101 TGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCC 43157 |||| | | | ||||| |||| || || || | || || || || || Sbjct 54583 GCCTTGACATTGTCAATGGTGTCTGAGCTC---TCAACTTCAAGAGTTATTGTCTTACCA 54639 Query 43158 GTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || |||||||||||||| Sbjct 54640 GTGAGGGTTTTCACAAAGATTTGCAT 54665 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || | ||| | |||||| || | ||| ||||| || ||||| ||||| || Sbjct 55350 TCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTGC 55409 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || | ||||| || || || ||||| | ||| ||||| | || Sbjct 55410 AAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGGG 55469 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCG---CTCGATT 43131 | || ||||||||| || || || | ||| | || |||||| ||| | Sbjct 55470 AATGCCTTCCTTGTCCTGTATCTTAGCCTTTA-CGTTGTCAATTGTGTCGGAGCTC---T 55525 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||| ||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 55526 CAACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577 >seq1982 Length=56187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 32381 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAG 32322 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 ||||||||||||||||| | || | | |||||||||| Sbjct 32321 ATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC 32283 >seq39132 Length=4176 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||||||| | || || ||| ||||||||| |||| |||||||||||||||| | Sbjct 1739 ATAAAAAATTTACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAA 1680 Query 60114 TACTCACCACTATACTAC 60131 |||| ||||||||||||| Sbjct 1679 TACTTACCACTATACTAC 1662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569047186614320