Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq87 98.7 1e-15
seq36 96.9 5e-15
>seq87
Length=177581
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| | | |||||||| | || |||||||| || |||||||| | |
Sbjct 55123 CCACCACGAAGACGGAGCACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCA 55182
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || || | ||| || | ||| || |||||||| |||||||| ||||| || ||||||
Sbjct 55183 AGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA 55242
Query 146171 ATTCCTTCTTTATCTTG 146187
||||| || ||||||||
Sbjct 55243 ATTCCCTCCTTATCTTG 55259
>seq36
Length=331580
Score = 96.9 bits (106), Expect = 5e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106
||||||||||||||| | || || | || | || |||||||| || || |||||
Sbjct 256994 CGTTCCACCTCTAAGCCGCAACACGAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATC 256935
Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166
| ||| || | || ||| || |||||||| |||||||| |||| || |||||||| ||
Sbjct 256934 AGCAAGGGTGCGGCCATCCTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGATCAGG 256875
Query 146167 AGGAATTCCTTCTTTATCTTG 146187
|||||| ||||| || || ||
Sbjct 256874 AGGAATACCTTCCTTGTCCTG 256854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 739924070356480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |