Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq87 98.7 1e-15 seq36 96.9 5e-15 >seq87 Length=177581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | || |||||||| || |||||||| | | Sbjct 55123 CCACCACGAAGACGGAGCACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCA 55182 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | ||| || |||||||| |||||||| ||||| || |||||| Sbjct 55183 AGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA 55242 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 55243 ATTCCCTCCTTATCTTG 55259 >seq36 Length=331580 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106 ||||||||||||||| | || || | || | || |||||||| || || ||||| Sbjct 256994 CGTTCCACCTCTAAGCCGCAACACGAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATC 256935 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | ||| || | || ||| || |||||||| |||||||| |||| || |||||||| || Sbjct 256934 AGCAAGGGTGCGGCCATCCTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGATCAGG 256875 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| || || || Sbjct 256874 AGGAATACCTTCCTTGTCCTG 256854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739924070356480