Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 118 7e-22
seq45117 118 7e-22
seq184 91.5 9e-14
seq4209 86.0 4e-12
seq1982 84.2 1e-11
>seq48644
Length=2856
Score = 118 bits (130), Expect = 7e-22
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | ||| || || || ||||||||||||| || ||| ||||
Sbjct 1849 AGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCC 1908
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||| ||||| ||||| ||||| ||||||||||| || | || ||||||||
Sbjct 1909 TCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 1968
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||| || ||||| | || | | || | |||| ||||| || || | || || ||
Sbjct 1969 TGGATC-TTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGT 2027
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| ||||| || |||||||||||||||||||||
Sbjct 2028 CTTCCCGGTTAGTGTTTTCACAAAGATCTGCATC 2061
>seq45117
Length=3449
Score = 118 bits (130), Expect = 7e-22
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | ||| || || || ||||||||||||| || ||| ||||
Sbjct 2442 AGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCC 2501
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||| ||||| ||||| ||||| ||||||||||| || | || ||||||||
Sbjct 2502 TCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 2561
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||| || ||||| | || | | || | |||| ||||| || || | || || ||
Sbjct 2562 TGGATC-TTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGT 2620
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| ||||| || |||||||||||||||||||||
Sbjct 2621 CTTCCCGGTTAGTGTTTTCACAAAGATCTGCATC 2654
>seq184
Length=120086
Score = 91.5 bits (100), Expect = 9e-14
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | || ||| ||||| || ||||| |||| || ||| | ||
Sbjct 5438 AGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCC 5379
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || ||||| || ||||| |||||||| || | | ||||||||
Sbjct 5378 TCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCC 5319
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|||||| ||| | || | | || | |||| |||||||| || | || || ||
Sbjct 5318 TGGATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTC 5259
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || || || ||||| || || |||||||||
Sbjct 5258 TTACCCGTCAGGGTTTTGACGAAAATCTGCATC 5226
>seq4209
Length=73032
Score = 86.0 bits (94), Expect = 4e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | |||| || ||||| ||||| ||||| | || | | ||
Sbjct 22 AGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTACCATCC 81
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296
|| | ||||||||| || || ||||| ||||||||||| | ||| | || ||||||||
Sbjct 82 TCGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCT-TCCTTGTC 140
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | || | |||| | || | || || || | || |||||
Sbjct 141 TTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATGGT 200
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| ||||| | |||||||||||||||||||||
Sbjct 201 CTTTCCGGTCAATGTTTTCACAAAGATCTGCATC 234
>seq1982
Length=56187
Score = 84.2 bits (92), Expect = 1e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 34225 CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCAC 34284
||| ||| |||| || | |||||| || ||||| ||||| ||||||||||| || |
Sbjct 32283 CTGNCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGAT 32224
Query 34285 GCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTC 34344
| ||||||||| ||||| ||| | || | | || | |||| || || || ||
Sbjct 32223 TCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTC 32164
Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
| || || || || || || || |||||||| ||||||||||||
Sbjct 32163 GAGGGTTATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATC 32118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 321545871880640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |