Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq48644 118 7e-22 seq45117 118 7e-22 seq184 91.5 9e-14 seq4209 86.0 4e-12 seq1982 84.2 1e-11 >seq48644 Length=2856 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || || || ||||||||||||| || ||| |||| Sbjct 1849 AGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCC 1908 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| ||||| ||||| ||||| ||||||||||| || | || |||||||| Sbjct 1909 TCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 1968 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | |||| ||||| || || | || || || Sbjct 1969 TGGATC-TTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGT 2027 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || ||||||||||||||||||||| Sbjct 2028 CTTCCCGGTTAGTGTTTTCACAAAGATCTGCATC 2061 >seq45117 Length=3449 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || || || ||||||||||||| || ||| |||| Sbjct 2442 AGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCC 2501 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| ||||| ||||| ||||| ||||||||||| || | || |||||||| Sbjct 2502 TCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 2561 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | |||| ||||| || || | || || || Sbjct 2562 TGGATC-TTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGT 2620 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || ||||||||||||||||||||| Sbjct 2621 CTTCCCGGTTAGTGTTTTCACAAAGATCTGCATC 2654 >seq184 Length=120086 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || ||| ||||| || ||||| |||| || ||| | || Sbjct 5438 AGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCC 5379 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || ||||| |||||||| || | | |||||||| Sbjct 5378 TCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCC 5319 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | |||| |||||||| || | || || || Sbjct 5318 TGGATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTC 5259 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || ||||| || || ||||||||| Sbjct 5258 TTACCCGTCAGGGTTTTGACGAAAATCTGCATC 5226 >seq4209 Length=73032 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| || ||||| ||||| ||||| | || | | || Sbjct 22 AGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTACCATCC 81 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| || || ||||| ||||||||||| | ||| | || |||||||| Sbjct 82 TCGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCT-TCCTTGTC 140 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | |||| | || | || || || | || ||||| Sbjct 141 TTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATGGT 200 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| | ||||||||||||||||||||| Sbjct 201 CTTTCCGGTCAATGTTTTCACAAAGATCTGCATC 234 >seq1982 Length=56187 Score = 84.2 bits (92), Expect = 1e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 34225 CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCAC 34284 ||| ||| |||| || | |||||| || ||||| ||||| ||||||||||| || | Sbjct 32283 CTGNCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGAT 32224 Query 34285 GCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTC 34344 | ||||||||| ||||| ||| | || | | || | |||| || || || || Sbjct 32223 TCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTC 32164 Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || || || || || || || |||||||| |||||||||||| Sbjct 32163 GAGGGTTATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATC 32118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321545871880640