Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4197 113 4e-20 seq270 84.2 2e-11 >seq4197 Length=36674 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 |||||| ||||| || ||||| |||||||| | || |||||||| || || || || Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || ||||| |||||||| ||||| | ||||||||| ||| || ||||| ||||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCG 16393 ||||||||||| |||||| ||||| | |||||| || Sbjct 23539 GATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCG 23578 >seq270 Length=105985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 293/450 (65%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || || || || | ||||||||| ||||||||||| || || |||| |||||| ||| Sbjct 91501 TTCTGGTAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGA 91560 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC-AA 16062 ||||| ||||||| || || | || || || | || ||||| |||| || Sbjct 91561 TCCATCCAATCAAACGGGTTGGGTACACCGTACACCTTCCCACA-CCCAAGCGCAACCAA 91619 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 | ||||| || ||||| || || |||| |||| | | | ||||| || || || Sbjct 91620 CAGCCTATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCCATTCATCCCAATCAA 91679 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 || | || || | ||| | || || || | ||||| || | | || Sbjct 91680 CGCGCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGAT 91739 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTT--TAATAAGTGTTTAA-ACATTATACAAGC 16239 || ||||| | | || | ||| | || | | || ||| | || | |||||| Sbjct 91740 CCCTTTTACT-CGGTCTTCA--GGAAGCTTCTTCTTCAGGATTTCGTAGATCAAACAAGC 91796 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||||||||| || || |||||||| || ||| | |||||| || || || | ||||| Sbjct 91797 AAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGG 91856 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || || |||||||| | ||| |||| ||| || || || ||||| || || Sbjct 91857 CATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATGCC 91916 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTC 16389 ||| || || || || || | |||||| Sbjct 91917 TTCCACGCAAGCGAAAGCGACGATTCGCTC 91946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460271164048400