Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 113 4e-20
seq270 84.2 2e-11
>seq4197
Length=36674
Score = 113 bits (124), Expect = 4e-20
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293
|||||| ||||| || ||||| |||||||| | || |||||||| || || || ||
Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478
Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353
|| ||||| |||||||| ||||| | ||||||||| ||| || ||||| |||||
Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538
Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCG 16393
||||||||||| |||||| ||||| | |||||| ||
Sbjct 23539 GATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCG 23578
>seq270
Length=105985
Score = 84.2 bits (92), Expect = 2e-11
Identities = 293/450 (65%), Gaps = 8/450 (2%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|| || || || | ||||||||| ||||||||||| || || |||| |||||| |||
Sbjct 91501 TTCTGGTAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGA 91560
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC-AA 16062
||||| ||||||| || || | || || || | || ||||| |||| ||
Sbjct 91561 TCCATCCAATCAAACGGGTTGGGTACACCGTACACCTTCCCACA-CCCAAGCGCAACCAA 91619
Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122
| ||||| || ||||| || || |||| |||| | | | ||||| || || ||
Sbjct 91620 CAGCCTATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCCATTCATCCCAATCAA 91679
Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182
|| | || || | ||| | || || || | ||||| || | | ||
Sbjct 91680 CGCGCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGAT 91739
Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTT--TAATAAGTGTTTAA-ACATTATACAAGC 16239
|| ||||| | | || | ||| | || | | || ||| | || | ||||||
Sbjct 91740 CCCTTTTACT-CGGTCTTCA--GGAAGCTTCTTCTTCAGGATTTCGTAGATCAAACAAGC 91796
Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299
||||||||| || || |||||||| || ||| | |||||| || || || | |||||
Sbjct 91797 AAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGG 91856
Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359
||| || || |||||||| | ||| |||| ||| || || || ||||| || ||
Sbjct 91857 CATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATGCC 91916
Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTC 16389
||| || || || || || | ||||||
Sbjct 91917 TTCCACGCAAGCGAAAGCGACGATTCGCTC 91946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460271164048400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |