Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 87.8 1e-12
seq87 82.4 6e-11
>seq9434
Length=50679
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || | ||| |||| ||||||||| || || ||||||||||| ||||| ||
Sbjct 45166 TCCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCTGC 45225
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | |||||| | || || || ||| | || | || ||||| || ||
Sbjct 45226 TAATGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGGTGG 45285
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || |||||||| ||| | ||| || | ||| ||||| | |||
Sbjct 45286 AATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTCTCCAC 45345
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | |||||| | || ||||||| || || |||||||| |||||
Sbjct 45346 TTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393
>seq87
Length=177581
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| |||| || | ||| |||| ||| || || ||||| || || || || || || ||
Sbjct 55350 TCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTGC 55409
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| || |||||||||||| || || ||| |||| || || ||||| || |||
Sbjct 55410 AAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGGG 55469
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||| || || | ||| || | ||| ||||| | |||
Sbjct 55470 AATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCAAC 55529
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | |||||| | ||||| || | || || ||||| ||||||||
Sbjct 55530 TTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 377552054101530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |