Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq9434 87.8 1e-12 seq87 82.4 6e-11 >seq9434 Length=50679 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||| |||| ||||||||| || || ||||||||||| ||||| || Sbjct 45166 TCCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCTGC 45225 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | || || || ||| | || | || ||||| || || Sbjct 45226 TAATGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGGTGG 45285 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| ||| | ||| || | ||| ||||| | ||| Sbjct 45286 AATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTCTCCAC 45345 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || ||||||| || || |||||||| ||||| Sbjct 45346 TTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393 >seq87 Length=177581 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || | ||| |||| ||| || || ||||| || || || || || || || Sbjct 55350 TCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTGC 55409 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||||||||| || || ||| |||| || || ||||| || ||| Sbjct 55410 AAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGGG 55469 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | ||| || | ||| ||||| | ||| Sbjct 55470 AATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCAAC 55529 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | ||||| || | || || ||||| |||||||| Sbjct 55530 TTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377552054101530