Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4197 132 4e-26 seq48644 118 9e-22 seq45117 118 9e-22 seq184 104 2e-17 seq87 104 2e-17 seq9434 100 3e-16 seq1982 82.4 7e-11 >seq4197 Length=36674 Score = 132 bits (146), Expect = 4e-26 Identities = 378/569 (66%), Gaps = 24/569 (4%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| ||||| | ||||| ||| ||| | ||||| || ||||| ||||| ||||| Sbjct 23997 ATGTTCCCGATCAAGTATCCTCGCATATGGGAGATGTATAAGAAGGCCGAAGCCTCGTTC 23938 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT---CCCTCAAA 57662 ||||||| ||| || || ||||| || | ||||| | ||||||| |||| | Sbjct 23937 TGGACCGCCGAGGAGGTTGACCTCTCACAAGATCTCCGTCATTGGGAGGAAACCCTAACT 23878 Query 57663 GAATCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719 ||||| ||||| | ||||| || || | || || ||||| || ||||| || Sbjct 23877 ---TCTGATGAGAAGCACTTTATCTCTCATGTCCTCGCCTTCTTCGCAGCCTCCGACGGG 23821 Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCAC-AAGAAG-TGCAAGTGACGGAGGCGA 57777 || || ||||||| | | | || || || ||| || | || || | ||||| Sbjct 23820 ATCGTGCTCGAGAATCTCGCTGGGAGGTT--CATGAAGGAGATCCAGGTTTCCGAGGCTC 23763 Query 57778 GATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTAC 57837 | ||| ||||| || || | || || || || | || || |||||||| || | Sbjct 23762 GCGCCTTCTACGGCTTCCAGATCGCAATCGAGAATATCCACTCTGAAATGTACAGCCTTC 23703 Query 57838 TCATCGATACGTACGTGAAG---GACAACGACGAGAAACGTAGACTGTTCAACGCGATCG 57894 | |||| || | ||| ||| |||||| | | || ||| |||| |||| Sbjct 23702 TTCTCGAAAC---CCTGATTCGAGACTCGTCCGAGAAGCACCGGCTCTTCCACGCCATCG 23646 Query 57895 AAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCA 57954 | || | ||||| || ||||||| || || ||| | || ||||| | ||| Sbjct 23645 ATACTGTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCGCTGGATTGATTCCGCAG 23586 Query 57955 CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGG 58014 || ||||| ||| | || | || || ||| ||| |||||||| ||||| || | Sbjct 23585 AATCC---TTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTG 23529 Query 58015 GCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTT 58073 | ||||| |||| | ||||||||| | || || || || |||||||| || || || || Sbjct 23528 GAAGCTTCTGCG-CGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTGGACTAACCTTC 23470 Query 58074 AGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||||||||||| || |||||||| || Sbjct 23469 TCGAACGAGTTGATCTCCCGCGACGAAGG 23441 >seq48644 Length=2856 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || || || || || || || ||||| ||| | || |||||| | Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| || || ||||||||||||| | || || ||| Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||||||| | || ||| | || | ||| || Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||| || || || || || ||||| || Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 1849 >seq45117 Length=3449 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || || || || || || || ||||| ||| | || |||||| | Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| || || ||||||||||||| | || || ||| Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||||||| | || ||| | || | ||| || Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||| || || || || || ||||| || Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 2442 >seq184 Length=120086 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| |||||||| || || ||||| || || ||||| ||| |||| || ||| Sbjct 5222 CAAAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAAT 5281 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 | ||||||| |||| | || || || ||| | |||||||||||| | || || Sbjct 5282 CCTCCGACACCATCGACAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGAATTCCACCA 5340 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 |||||||| || ||||| ||||| || || ||| | || || || | |||| Sbjct 5341 GACCAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGAT 5400 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || |||||||| || || ||||| ||| Sbjct 5401 TACAATATCCAGAAGGAATCGACGCTCCACCTGGTGCTT 5439 >seq87 Length=177581 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || ||||| ||||||||| |||| ||||| ||| Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||||||||||||| | || || ||||| Sbjct 55517 GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAA 55458 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || || |||||||| | || | |||||||| Sbjct 55457 CAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAAT 55398 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || || || |||| ||| | |||||||| || Sbjct 55397 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGG 55351 >seq9434 Length=50679 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || ||||| |||||| | || |||||| || Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| |||||||||||| | || || |||||| Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 |||||||| || || ||||| || || |||| || ||| | ||| |||||||| Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCT-AGCTGATTATAA 44759 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || || || || ||||| || || ||| Sbjct 44758 CATTCAGAAGGAGTCCACCCTTCACCTCGTCCTT 44725 >seq1982 Length=56187 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 || || || ||||| || ||||| || || || || || || ||||| ||| |||| ||| Sbjct 32110 GAGTCGAAGATGCAGATCTTCGTGAAAACCCTTACGGGGAAGACGATAACCCTCGAGGTT 32169 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || | ||||||| |||| | || || | || ||||||||| || | || Sbjct 32170 GAGTCCTCCGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCA 32229 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||||||||| || || ||||| || || ||| | |||||| Sbjct 32230 CCGGACCAGCAGCGACTCATCTTCGCCGGGAAGCAGCTCGAAGAC 32274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443606695224480