Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4197 143 3e-29 seq270 107 2e-18 >seq4197 Length=36674 Score = 143 bits (158), Expect = 3e-29 Identities = 408/620 (66%), Gaps = 13/620 (2%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| |||||||||||||||| || ||||| | || || ||||| || || || || Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 ||| ||||| || || |||||||| ||||||||||| | ||| ||| || ||||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538 Query 33701 GATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCGCTGTCAT 33756 ||| ||||| || ||| ||||| |||| | | ||| | | | ||| ||| Sbjct 23539 GATACCTTCAAC-GCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA- 23596 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| | ||||| ||||| ||||| | ||| || | || || ||||| | Sbjct 23597 --ATCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654 Query 33817 TAAAGAGATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || | ||| || || |||| | ||| || ||| Sbjct 23655 GGAAGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTAC 23713 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 ||||| || || || || || || || ||||| || |||||||| | |||||||| | Sbjct 23714 ATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAA 23773 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | ||| | || | || | | || | ||| || ||| || || || |||| Sbjct 23774 ACCTGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCT 23833 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTC 34052 || || || || | ||||| ||||| | || || || | ||||| || | | Sbjct 23834 GCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCC 23893 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 |||| | || ||||| || | || || || || | ||||| || || || || ||| Sbjct 23894 CAATGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCC 23953 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 || |||||||| | ||| ||| | |||| | ||| ||||| ||| |||| || ||| Sbjct 23954 TTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGA 24013 Query 34173 TTTGGTGCAAGGATAGGTTC 34192 || | ||||||| ||| || Sbjct 24014 TTGGAGGCAAGGAGAGGCTC 24033 >seq270 Length=105985 Score = 107 bits (118), Expect = 2e-18 Identities = 396/620 (64%), Gaps = 3/620 (0%) Strand=Plus/Plus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||||||| || ||||| ||||| | || |||||||| || | ||||| || || Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || | ||| ||||| || || || ||||| ||||| |||| || ||| |||||| Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAG 91905 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33755 |||||||| ||||| || ||| || || | | || ||| | | || | | Sbjct 91906 AAGAAGATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGAA 91965 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | ||||| ||||| | ||||||||| | || ||| || || || || || Sbjct 91966 TCGATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCG 92025 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 | ||||| || || || | || || || | || | || || ||| Sbjct 92026 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGTAC 92085 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || ||||| ||||| |||| || ||||| || || ||||| | |||||||| Sbjct 92086 ATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGAG 92145 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | ||| | || | || | | | || | || || || ||||| || ||| Sbjct 92146 ACCTGGATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGCG 92205 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTC 34052 || || || || | || || || |||| ||| ||||| | ||||| || | | Sbjct 92206 GCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCCTCC 92265 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || | | |||||||| || || ||| || || || | ||||| || || || || || Sbjct 92266 CAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCT 92325 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 || || ||||| | |||||| | | |||||||||||||| || || | | || | Sbjct 92326 TTCTTGTACATCTCCCAGATCTTGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTGAA 92385 Query 34173 TTTGGTGCAAGGATAGGTTC 34192 || ||| | ||||| || || Sbjct 92386 TTGGGTACGAGGATTGGCTC 92405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626766180964320