Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 102 1e-16
>seq4197
Length=36674
Score = 102 bits (112), Expect = 1e-16
Identities = 392/610 (64%), Gaps = 7/610 (1%)
Strand=Plus/Plus
Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216
||| |||||||||||||| | || ||||| | || || ||||| || || || ||
Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478
Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275
||| ||||| || || |||||||| ||||||||||| | |||| || |||||| ||||
Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGA 23537
Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335
| || ||||| || ||||| |||| | | ||| | | | | || |
Sbjct 23538 AGATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCAA 23597
Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395
|||| | ||||| ||||| ||||| | ||| || | || || || || | |
Sbjct 23598 TCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGA 23657
Query 36396 AGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGACTATACATT 36454
|||| || || || || | ||| || || || | | ||| || ||||||
Sbjct 23658 AGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACATT 23716
Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514
|| || || || || || || || || || || |||||||| | |||||||| || |
Sbjct 23717 TCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACC 23776
Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574
|| | || | || | | || | ||| || ||| || ||||| ||||||
Sbjct 23777 TGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCG 23836
Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG---TTTATTCCAA 36631
|| || || | ||||| ||||| | || || | | ||||| || | ||||
Sbjct 23837 AAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCAA 23896
Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691
| | || ||||| || | || || || || | ||||| || || || || |||||
Sbjct 23897 TGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTTC 23956
Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTT 36751
|||||||| | ||| ||| | |||| | || || || ||| |||| || ||||
Sbjct 23957 TTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGATTG 24016
Query 36752 TTTGCAAGGA 36761
|||||||
Sbjct 24017 GAGGCAAGGA 24026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 654984002146960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |