Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4197 102 1e-16 >seq4197 Length=36674 Score = 102 bits (112), Expect = 1e-16 Identities = 392/610 (64%), Gaps = 7/610 (1%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| |||||||||||||| | || ||||| | || || ||||| || || || || Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275 ||| ||||| || || |||||||| ||||||||||| | |||| || |||||| |||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGA 23537 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335 | || ||||| || ||||| |||| | | ||| | | | | || | Sbjct 23538 AGATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCAA 23597 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 |||| | ||||| ||||| ||||| | ||| || | || || || || | | Sbjct 23598 TCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGA 23657 Query 36396 AGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 |||| || || || || | ||| || || || | | ||| || |||||| Sbjct 23658 AGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACATT 23716 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || || || || || || || || || || || |||||||| | |||||||| || | Sbjct 23717 TCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACC 23776 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || | || | || | | || | ||| || ||| || ||||| |||||| Sbjct 23777 TGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCG 23836 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG---TTTATTCCAA 36631 || || || | ||||| ||||| | || || | | ||||| || | |||| Sbjct 23837 AAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCAA 23896 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 | | || ||||| || | || || || || | ||||| || || || || ||||| Sbjct 23897 TGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTTC 23956 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTT 36751 |||||||| | ||| ||| | |||| | || || || ||| |||| || |||| Sbjct 23957 TTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGATTG 24016 Query 36752 TTTGCAAGGA 36761 ||||||| Sbjct 24017 GAGGCAAGGA 24026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654984002146960