Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 105 7e-18
seq48644 96.9 3e-15
seq45117 96.9 3e-15
seq87 86.0 6e-12
>seq9434
Length=50679
Score = 105 bits (116), Expect = 7e-18
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596
|| ||||| | ||| | || | ||||| || ||||| || |||||||||||||| |||
Sbjct 44711 CCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCT 44770
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| || || || || || |||||| |||||||||| ||||| || |||||
Sbjct 44771 -AGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 44829
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715
|| ||||| ||||| ||| |||| | ||| | | || | ||| || | | || |
Sbjct 44830 AATCCCTTCCTTGTC-CTGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCTTTCAA 44888
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| | ||| | || || || ||||| || || || |||||||||||
Sbjct 44889 CCTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937
>seq48644
Length=2856
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || | ||| | |||||||| ||||||||||| || |||
Sbjct 1833 GCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGC 1892
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||| || |||||||| || || |||| ||||| ||||| || || ||
Sbjct 1893 GAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGG 1952
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||| ||||| ||| || ||| | | || | ||||||| | || ||
Sbjct 1953 GATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAAC 2012
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | |||||| ||||| | ||||| || || || |||||
Sbjct 2013 CTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2060
>seq45117
Length=3449
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || | ||| | |||||||| ||||||||||| || |||
Sbjct 2426 GCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGC 2485
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||| || |||||||| || || |||| ||||| ||||| || || ||
Sbjct 2486 GAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGG 2545
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||| ||||| ||| || ||| | | || | ||||||| | || ||
Sbjct 2546 GATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAAC 2605
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | |||||| ||||| | ||||| || || || |||||
Sbjct 2606 CTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2653
>seq87
Length=177581
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| ||||||||||||||||| || ||| || ||||| ||||| || ||
Sbjct 54697 GTTGACTCCTTTTGAATGTTATAATCTGCCAATGTCCTTCCATCTTCAAGCTGCTTCCCT 54756
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686
||| | |||| | |||||||| || || || || ||||| || ||| | || | ||
Sbjct 54757 GCAAAAATCAACCTCTGCTGATCTGGTGGAATTCCCTCTTTATC-CTGAATCTTCGCCTT 54815
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | |||||| | | |||||| || | || | ||||| ||||||| ||
Sbjct 54816 CACATTGTCAATTGTGTCCGAGCTCTCCACTTCCAATGTAATGGTCTTTCCGGTCAGGGT 54875
Query 139747 TTTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 54876 CTTCACGAAAATCTGCATA 54894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 493660607124800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |