Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 152 7e-32
seq270 120 4e-22
>seq4197
Length=36674
Score = 152 bits (168), Expect = 7e-32
Identities = 407/613 (66%), Gaps = 13/613 (2%)
Strand=Plus/Plus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| |||||||||||||||| || ||||| | || | ||||| || || || ||
Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077
||| ||||| || || |||||||| ||||||||||| | |||| || ||||| ||||
Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGA 23537
Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCGCTGTCAT 50134
|||| ||||| || |||||| ||||| | | ||| | | | | ||| |||
Sbjct 23538 AGATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA- 23596
Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194
||||| | ||||| ||||| ||||| | ||| || | || || ||||| |
Sbjct 23597 --ATCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654
Query 50195 TAAAGAGATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAGACTATAC 50253
||||| || || || || | ||| || || |||| | ||| || |||
Sbjct 23655 GGAAGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTAC 23713
Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313
||||| || || || || || || || ||||| || |||||||| | |||||||| |
Sbjct 23714 ATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAA 23773
Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373
| ||| | || | || | |||| | ||| || ||| || ||||| ||||
Sbjct 23774 ACCTGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCT 23833
Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTC 50430
|| || || || | ||||| ||||| || || || | | ||||| || | |
Sbjct 23834 GCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCC 23893
Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490
|||| | || ||||| || | || || || || | ||||| || || || || |||
Sbjct 23894 CAATGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCC 23953
Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550
|| |||||||| | ||| ||| | |||| | ||| ||||| ||| |||| || |||
Sbjct 23954 TTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGA 24013
Query 50551 TTTGGTGCAAGGA 50563
|| | |||||||
Sbjct 24014 TTGGAGGCAAGGA 24026
>seq270
Length=105985
Score = 120 bits (132), Expect = 4e-22
Identities = 401/621 (65%), Gaps = 5/621 (1%)
Strand=Plus/Plus
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||||||| || ||||| ||||| | || |||||||| || || |||||||| ||
Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGA 50072
|| | ||| ||||| || || || ||||| ||||| |||| || |||| | | || ||
Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGG-CGCAGAAGCTTCCGGA 91904
Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132
|||||||| ||||| || || || || || | || ||| | | || |
Sbjct 91905 GAAGAAGATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGA 91964
Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192
|| ||||| ||||| | ||||||||| | || ||| || || || || ||
Sbjct 91965 ATCGATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGC 92024
Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252
| ||||| || || || | || || || | || | || || ||
Sbjct 92025 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGTA 92084
Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312
||| || ||||| ||||| |||| || ||||| || || ||||| | ||||||||
Sbjct 92085 CATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGA 92144
Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372
| ||| | || | || | | | || | || || || |||||||| |||
Sbjct 92145 GACCTGGATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGC 92204
Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATT 50429
|| || || || | || || || |||||||| |||| || ||||| || |
Sbjct 92205 GGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCCTC 92264
Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489
||| | | |||||||| || || ||| || || || | ||||| || || || || ||
Sbjct 92265 CCAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 92324
Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 50549
|| || ||||| | |||||| | | |||||||||||||| || || | | ||
Sbjct 92325 TTTCTTGTACATCTCCCAGATCTTGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTGA 92384
Query 50550 ATTTGGTGCAAGGATCGGTTC 50570
||| ||| | ||||| || ||
Sbjct 92385 ATTGGGTACGAGGATTGGCTC 92405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 714788841534160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |