Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4197 152 7e-32 seq270 120 4e-22 >seq4197 Length=36674 Score = 152 bits (168), Expect = 7e-32 Identities = 407/613 (66%), Gaps = 13/613 (2%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| |||||||||||||||| || ||||| | || | ||||| || || || || Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 ||| ||||| || || |||||||| ||||||||||| | |||| || ||||| |||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGA 23537 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCGCTGTCAT 50134 |||| ||||| || |||||| ||||| | | ||| | | | | ||| ||| Sbjct 23538 AGATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA- 23596 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | ||||| ||||| ||||| | ||| || | || || ||||| | Sbjct 23597 --ATCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654 Query 50195 TAAAGAGATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 ||||| || || || || | ||| || || |||| | ||| || ||| Sbjct 23655 GGAAGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTAC 23713 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 ||||| || || || || || || || ||||| || |||||||| | |||||||| | Sbjct 23714 ATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAA 23773 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | ||| | || | || | |||| | ||| || ||| || ||||| |||| Sbjct 23774 ACCTGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCT 23833 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTC 50430 || || || || | ||||| ||||| || || || | | ||||| || | | Sbjct 23834 GCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCC 23893 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 |||| | || ||||| || | || || || || | ||||| || || || || ||| Sbjct 23894 CAATGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCC 23953 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || |||||||| | ||| ||| | |||| | ||| ||||| ||| |||| || ||| Sbjct 23954 TTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGA 24013 Query 50551 TTTGGTGCAAGGA 50563 || | ||||||| Sbjct 24014 TTGGAGGCAAGGA 24026 >seq270 Length=105985 Score = 120 bits (132), Expect = 4e-22 Identities = 401/621 (65%), Gaps = 5/621 (1%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||||||| || ||||| ||||| | || |||||||| || || |||||||| || Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGA 50072 || | ||| ||||| || || || ||||| ||||| |||| || |||| | | || || Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGG-CGCAGAAGCTTCCGGA 91904 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 |||||||| ||||| || || || || || | || ||| | | || | Sbjct 91905 GAAGAAGATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGA 91964 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || ||||| ||||| | ||||||||| | || ||| || || || || || Sbjct 91965 ATCGATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGC 92024 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | ||||| || || || | || || || | || | || || || Sbjct 92025 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGTA 92084 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || ||||| ||||| |||| || ||||| || || ||||| | |||||||| Sbjct 92085 CATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGA 92144 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| | || | || | | | || | || || || |||||||| ||| Sbjct 92145 GACCTGGATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGC 92204 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATT 50429 || || || || | || || || |||||||| |||| || ||||| || | Sbjct 92205 GGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCCTC 92264 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| | | |||||||| || || ||| || || || | ||||| || || || || || Sbjct 92265 CCAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 92324 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 50549 || || ||||| | |||||| | | |||||||||||||| || || | | || Sbjct 92325 TTTCTTGTACATCTCCCAGATCTTGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTGA 92384 Query 50550 ATTTGGTGCAAGGATCGGTTC 50570 ||| ||| | ||||| || || Sbjct 92385 ATTGGGTACGAGGATTGGCTC 92405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714788841534160