Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq48644 105 5e-18 seq45117 105 5e-18 seq87 96.9 3e-15 >seq48644 Length=2856 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| || | | ||||| |||| || ||||||||| | ||||| |||| Sbjct 1832 CGCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGG 1891 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | ||||| |||| || | ||||||||||| || || | ||||| || || | | Sbjct 1892 CGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 1951 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | ||||| || || |||| | |||| || || | | |||||| || || | Sbjct 1952 GGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAA 2011 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 | |||| ||||| || || |||||||| ||||||||||| || ||||| ||| Sbjct 2012 CCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTTC 2064 >seq45117 Length=3449 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| || | | ||||| |||| || ||||||||| | ||||| |||| Sbjct 2425 CGCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGG 2484 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | ||||| |||| || | ||||||||||| || || | ||||| || || | | Sbjct 2485 CGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 2544 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | ||||| || || |||| | |||| || || | | |||||| || || | Sbjct 2545 GGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAA 2604 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 | |||| ||||| || || |||||||| ||||||||||| || ||||| ||| Sbjct 2605 CCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTTC 2657 >seq87 Length=177581 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||| |||| ||| ||||||||| | || ||||| | | Sbjct 54667 CCTCCACGAAGACGAAGGACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCC 54726 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | | || || | || || || ||||||||||| | ||| ||||| | || Sbjct 54727 AATGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGGA 54786 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || ||||| || ||| ||| | | || || || ||| |||||| | ||| ||| | Sbjct 54787 ATTCCCTCTTTATC-CTGAATCTTCGCCTTCACATTGTCAATTGTGTC-CGAGCTCTCCA 54844 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || |||||||| || || ||||| ||||| ||||| Sbjct 54845 CTTCCAATGTAATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 54893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379568085568452