Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 141 1e-28
>seq4197
Length=36674
Score = 141 bits (156), Expect = 1e-28
Identities = 401/610 (66%), Gaps = 7/610 (1%)
Strand=Plus/Plus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| |||||||||||||||| || || || | || || ||||| || || || ||
Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182
||| ||||| || || |||||||| ||||||||||| | |||| || |||||| ||||
Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGA 23537
Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 42242
|||| ||||| || ||||| |||| | | ||| | | | | || |
Sbjct 23538 AGATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCAA 23597
Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302
|||| | ||||| ||||| ||||| | ||| || | || || ||||| | |
Sbjct 23598 TCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGA 23657
Query 42303 AGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCGATCAAAAGACTATACATT 42361
|||| || || || || | ||| || || |||| | ||| || ||||||
Sbjct 23658 AGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACATT 23716
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| || || || || || || || ||||| || |||||||| | ||||||| ||||
Sbjct 23717 TCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACC 23776
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|| | || | || | |||| | ||| ||| ||| || ||||| ||||||
Sbjct 23777 TGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCG 23836
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAA 42538
|| || || | ||||| ||||| | || || || | |||| || | ||||
Sbjct 23837 AAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCAA 23896
Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598
| | || ||||| || | || || || || | ||||| || || ||||| |||||
Sbjct 23897 TGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTTC 23956
Query 42599 TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658
|||||||| | ||| || | |||| | || ||||| ||| |||| || |||||
Sbjct 23957 TTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGATTG 24016
Query 42659 GGTGCAAGGA 42668
| |||||||
Sbjct 24017 GAGGCAAGGA 24026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 667887580911440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |