Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq87 86.0 6e-12
seq9434 84.2 2e-11
>seq87
Length=177581
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | || ||||| | || |||||||| || ||||| |||||
Sbjct 55123 CCACCACGAAGACGGAGCACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCA 55182
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || ||||||||||| || |||||| |||||| | ||||| || |||||
Sbjct 55183 AGGGTCCTTCCATCTTCGAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA 55242
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || || || || ||| || ||| | | || | ||||| | | || |||
Sbjct 55243 ATTCCCTCCTTATCTTGAATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCAACT 55302
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| ||| | |||||||| ||||| || || || || || |||||
Sbjct 55303 TCAAGAGTAATAGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 55349
>seq9434
Length=50679
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016
|| ||||| | ||| | || | |||| || || || || || ||||| ||||| |||
Sbjct 44711 CCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCT 44770
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| || || ||||| || |||||| |||||||||| ||||| || |||||
Sbjct 44771 -AGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 44829
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| |||||| || | | || | || || | | ||| ||
Sbjct 44830 AATCCCTTCCTTGTCCTGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCTTTCAAC 44889
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || || || |||||||| || || |||||||||||
Sbjct 44890 CTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 504557953258080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |