Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq270 127 3e-24 >seq270 Length=105985 Score = 127 bits (140), Expect = 3e-24 Identities = 381/569 (67%), Gaps = 33/569 (6%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| || || | |||||||| ||||| | ||| ||||||||||| Sbjct 92345 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTA 92286 Query 125079 TCCAAGGACCTGTACG--ATTGGGAG---ACTCGTTTGACTGAAACTGAGCGAGAGTTTA 125133 | | || | | || | |||||| |||| || || ||| | | || | Sbjct 92285 ACTCAAGA--TATCCGTCACTGGGAGGAAACTCTAACCACCGAC---GAGAAACATTTCA 92231 Query 125134 TATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGA 125193 | || ||| | | |||||||| |||| |||||| |||||||| ||| || || Sbjct 92230 TCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTCTCGAGAACCTCGCCG 92171 Query 125194 CACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAA 125250 | | ||| | || | ||| || | |||| ||| || || || || ||||| | Sbjct 92170 GAAGGTTCATGAATGATAT--CCAGGTCTCCGAGGC-TCGCGCCTTCTATGGTTTCCAGA 92114 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 || |||||||| | || || || |||||| || ||| | | | ||||| | Sbjct 92113 TCGCAGTTGAGAACATCCATTCTGAGATGTACAGCCTCCTCATTCAAACGCTAATTCGGG 92054 Query 125311 A-TCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGGT----GCCGTCTATAC 125364 | |||| ||| || ||| ||||| ||||||| ||||| | |||||| || Sbjct 92053 ACTCCG--ACGAGAAGCACCGCCTCTTCCACGCAATTGACACCATCCCTGCCGTC---AC 91999 Query 125365 GTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACA 125424 || ||||| || |||| | || ||||||||| | | | || | |||||| Sbjct 91998 A-AAGAAGGCGCAGTGGGCCTTGCGATGGATCGATTCCTCCGAATCCTT---CGCCGAGC 91943 Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATC 125483 || | || || ||||| ||| || ||||||||||| || || || || ||| ||| | Sbjct 91942 GAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGC-GCCGTA 91884 Query 125484 TTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCT 125543 || ||||| || || ||||| || ||||| ||| |||| | |||||| ||||||| Sbjct 91883 TTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAACGAGCTTATATCC 91824 Query 125544 CGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||||| ||| |||||||||| ||||| Sbjct 91823 AGAGACGAAGGCTTACACTGTGATTTTGC 91795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737468823755440